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The map label for this gene is padR [H]

Identifier: 27364762

GI number: 27364762

Start: 1347582

End: 1348193

Strand: Reverse

Name: padR [H]

Synonym: VV1_1367

Alternate gene names: 27364762

Gene position: 1348193-1347582 (Counterclockwise)

Preceding gene: 326423826

Following gene: 27364758

Centisome position: 41.08

GC content: 47.71

Gene sequence:

>612_bases
TTGCATCAACAAGAATGTAAACGCCGTGCAGGCAGCTTGTTCATAAGTTTATTGACCATTTGGATTGAAGACATGTCATT
ACCACACGTAATTCTAACCGTTTTAAGCACTCGTGATGCGACCGGTTACGATATCACTAAAGAATTCTCCGCTTCTATCG
GCTACTTTTGGAAAGCAAGTCACCAACAGGTGTACCGTGAGCTGAATAAAATGGCAGAGAAAGAGCTGGTAACTTGTGTA
TTGGAACCGCAAGAAGGCAAGCCGGATCGCAAAGTTTATTCAATTACCGACGCTGGACGCTCAGCATTAGGTGAGTGGTT
TGATCAACCGACAGCTCACCCAACTGTACGCGACGAGTTTTCAGCAAAACTGATGGCTTGCTCAGTACAACCCTCTGCGC
CTTACCGCGCTCAGCTTGCTGAGTTAGTAGAAGAGTCTCGCAAGCTTGTCTCACACTACAAAGAAATTGAAGCCGCTTAC
TACGCGACACCATCGACACTGGATAAGCAAGGCCGCCTAGAGCGCCTCACCTTGCGACGTAATTTGATGATGCGTGAAGC
TTGGGTACGCTGGGCAGAAGAAGTGTTAGCCGAACTGGATATCCTCGGCTAA

Upstream 100 bases:

>100_bases
ATTTCTGCAGCCTGATGGAATCGCTCCATCCACCCTAGGTGATAAACGGCTTTAAAGGTGACAGGACCAACATTGTTGGT
GCTGACTGCACATAAACAAA

Downstream 100 bases:

>100_bases
TCCACCAGCCACATACGCTAGACAATGTGGCGGTGATGATTTGAGATAGCAAAACGGCTCCTGATAAGGGAGCCGTTTTT
ATATGAGGGAGAGATAGAAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MHQQECKRRAGSLFISLLTIWIEDMSLPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMAEKELVTCV
LEPQEGKPDRKVYSITDAGRSALGEWFDQPTAHPTVRDEFSAKLMACSVQPSAPYRAQLAELVEESRKLVSHYKEIEAAY
YATPSTLDKQGRLERLTLRRNLMMREAWVRWAEEVLAELDILG

Sequences:

>Translated_203_residues
MHQQECKRRAGSLFISLLTIWIEDMSLPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMAEKELVTCV
LEPQEGKPDRKVYSITDAGRSALGEWFDQPTAHPTVRDEFSAKLMACSVQPSAPYRAQLAELVEESRKLVSHYKEIEAAY
YATPSTLDKQGRLERLTLRRNLMMREAWVRWAEEVLAELDILG
>Mature_203_residues
MHQQECKRRAGSLFISLLTIWIEDMSLPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMAEKELVTCV
LEPQEGKPDRKVYSITDAGRSALGEWFDQPTAHPTVRDEFSAKLMACSVQPSAPYRAQLAELVEESRKLVSHYKEIEAAY
YATPSTLDKQGRLERLTLRRNLMMREAWVRWAEEVLAELDILG

Specific function: Negative transcriptional regulator of padC phenolic acid decarboxylase [H]

COG id: COG1695

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018309
- InterPro:   IPR005149
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03551 PadR; PF10400 Vir_act_alpha_C [H]

EC number: NA

Molecular weight: Translated: 23326; Mature: 23326

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQQECKRRAGSLFISLLTIWIEDMSLPHVILTVLSTRDATGYDITKEFSASIGYFWKAS
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
HQQVYRELNKMAEKELVTCVLEPQEGKPDRKVYSITDAGRSALGEWFDQPTAHPTVRDEF
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCHHHHH
SAKLMACSVQPSAPYRAQLAELVEESRKLVSHYKEIEAAYYATPSTLDKQGRLERLTLRR
HHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHH
NLMMREAWVRWAEEVLAELDILG
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHQQECKRRAGSLFISLLTIWIEDMSLPHVILTVLSTRDATGYDITKEFSASIGYFWKAS
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
HQQVYRELNKMAEKELVTCVLEPQEGKPDRKVYSITDAGRSALGEWFDQPTAHPTVRDEF
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCHHHHH
SAKLMACSVQPSAPYRAQLAELVEESRKLVSHYKEIEAAYYATPSTLDKQGRLERLTLRR
HHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHH
NLMMREAWVRWAEEVLAELDILG
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]