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The map label for this gene is yjjV [C]

Identifier: 30995468

GI number: 30995468

Start: 1733161

End: 1733916

Strand: Reverse

Name: yjjV [C]

Synonym: HI1664

Alternate gene names: 30995468

Gene position: 1733916-1733161 (Counterclockwise)

Preceding gene: 16273552

Following gene: 16273550

Centisome position: 94.74

GC content: 35.58

Gene sequence:

>756_bases
ATGTTATTTGACAGCCATCTTCATTTAGACCAACTCTCTGACGAGAATATTCAGCAAACACTTGCTCATTCAAAGATTAT
AGGTATGCTTGCGGTGAGTACTAATCTCAACAGTGCTAAAAAACTGCTGAATTTAAAACAGACTTACCCAAAGAAACTTT
ATATTGCAGCCGGTTTTCATCCTGAACAGCAATTACCTAGTTTAGAAGAACAAAAAAAATTATTTCAATGGATTGACGAA
CATCATTCATCGATTTCTGCCATTGGCGAGGTGGGCTTGCCACATTATTCTAAACGAGAAAATCCGAATTTAGATTACGT
GCCTTACATTGAATTACTGGAGCGATTTATTCTGATAGCGAAAAAATGGGATTTACCGTTAAATTTGCATATTGTACATA
ACGATGTAGAAATTGCCCTTGAATTATTGCAGAAACATAATATTCAACGGGCTCATTTTCACTGGTTTAAGACAGATGAA
AAATCTTTTCAGAAATTTTTCTCTACCCCCTATTTTGCAAGCCTAACCCCTGATATTTTATGGAACTCTAAAACACAGTA
TGTTGCTCAACATTTGTCGTTAAACCGTTTGATGATTGAAACGGATAGCCCTTGGCAACACGAAGGATTTGAACGTGCGG
GCATTTCTGAACAATTATTGGCTGTATTGCAGAAACTAGCTGAATTAAAGTCTTTGCCATTACATTCTGTTCAAAAGCAA
ATCCTTTTGAATACTCAACAGTTTTATCGATTATAA

Upstream 100 bases:

>100_bases
TTTCATTCACGTAGATACAGGCCCTGTGAGAACTTGGAAAGGCGTGTAAAACAAATGTAAAATTAACCGCACTTTTGTGC
GGTTTTTCATTGGAAAAGAA

Downstream 100 bases:

>100_bases
GGAGCAAAAATGAATATCGAAATTATCCCCGTTACCGCATTCCAACAAAATTGTTCTTTGATTTGGGATGATGAAAAAAA
TGCCGCAATTATTGACCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MLFDSHLHLDQLSDENIQQTLAHSKIIGMLAVSTNLNSAKKLLNLKQTYPKKLYIAAGFHPEQQLPSLEEQKKLFQWIDE
HHSSISAIGEVGLPHYSKRENPNLDYVPYIELLERFILIAKKWDLPLNLHIVHNDVEIALELLQKHNIQRAHFHWFKTDE
KSFQKFFSTPYFASLTPDILWNSKTQYVAQHLSLNRLMIETDSPWQHEGFERAGISEQLLAVLQKLAELKSLPLHSVQKQ
ILLNTQQFYRL

Sequences:

>Translated_251_residues
MLFDSHLHLDQLSDENIQQTLAHSKIIGMLAVSTNLNSAKKLLNLKQTYPKKLYIAAGFHPEQQLPSLEEQKKLFQWIDE
HHSSISAIGEVGLPHYSKRENPNLDYVPYIELLERFILIAKKWDLPLNLHIVHNDVEIALELLQKHNIQRAHFHWFKTDE
KSFQKFFSTPYFASLTPDILWNSKTQYVAQHLSLNRLMIETDSPWQHEGFERAGISEQLLAVLQKLAELKSLPLHSVQKQ
ILLNTQQFYRL
>Mature_251_residues
MLFDSHLHLDQLSDENIQQTLAHSKIIGMLAVSTNLNSAKKLLNLKQTYPKKLYIAAGFHPEQQLPSLEEQKKLFQWIDE
HHSSISAIGEVGLPHYSKRENPNLDYVPYIELLERFILIAKKWDLPLNLHIVHNDVEIALELLQKHNIQRAHFHWFKTDE
KSFQKFFSTPYFASLTPDILWNSKTQYVAQHLSLNRLMIETDSPWQHEGFERAGISEQLLAVLQKLAELKSLPLHSVQKQ
ILLNTQQFYRL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family

Homologues:

Organism=Homo sapiens, GI110349730, Length=215, Percent_Identity=25.5813953488372, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87082439, Length=263, Percent_Identity=26.2357414448669, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1664_HAEIN (P45305)

Other databases:

- EMBL:   L42023
- PIR:   E64174
- RefSeq:   NP_439806.2
- ProteinModelPortal:   P45305
- SMR:   P45305
- GeneID:   950504
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1664
- NMPDR:   fig|71421.1.peg.1578
- TIGR:   HI_1664
- HOGENOM:   HBG339314
- OMA:   FHWFKTD
- ProtClustDB:   CLSK918309
- BioCyc:   HINF71421:HI_1664-MONOMER
- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- PANTHER:   PTHR10060
- PIRSF:   PIRSF005902

Pfam domain/function: PF01026 TatD_DNase

EC number: 3.1.21.-

Molecular weight: Translated: 29335; Mature: 29335

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS01137 TATD_1; PS01090 TATD_2; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFDSHLHLDQLSDENIQQTLAHSKIIGMLAVSTNLNSAKKLLNLKQTYPKKLYIAAGFH
CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCC
PEQQLPSLEEQKKLFQWIDEHHSSISAIGEVGLPHYSKRENPNLDYVPYIELLERFILIA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
KKWDLPLNLHIVHNDVEIALELLQKHNIQRAHFHWFKTDEKSFQKFFSTPYFASLTPDIL
HCCCCCEEEEEEECHHHHHHHHHHHCCCCHHHHEEECCCHHHHHHHHCCCCCCCCCHHHH
WNSKTQYVAQHLSLNRLMIETDSPWQHEGFERAGISEQLLAVLQKLAELKSLPLHSVQKQ
CCCHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
ILLNTQQFYRL
HHHCHHHHHCC
>Mature Secondary Structure
MLFDSHLHLDQLSDENIQQTLAHSKIIGMLAVSTNLNSAKKLLNLKQTYPKKLYIAAGFH
CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCC
PEQQLPSLEEQKKLFQWIDEHHSSISAIGEVGLPHYSKRENPNLDYVPYIELLERFILIA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
KKWDLPLNLHIVHNDVEIALELLQKHNIQRAHFHWFKTDEKSFQKFFSTPYFASLTPDIL
HCCCCCEEEEEEECHHHHHHHHHHHCCCCHHHHEEECCCHHHHHHHHCCCCCCCCCHHHH
WNSKTQYVAQHLSLNRLMIETDSPWQHEGFERAGISEQLLAVLQKLAELKSLPLHSVQKQ
CCCHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
ILLNTQQFYRL
HHHCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800