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The map label for this gene is ycbT [H]

Identifier: 30062478

GI number: 30062478

Start: 992839

End: 993822

Strand: Direct

Name: ycbT [H]

Synonym: S1007

Alternate gene names: 30062478

Gene position: 992839-993822 (Clockwise)

Preceding gene: 30062477

Following gene: 30062479

Centisome position: 21.59

GC content: 48.37

Gene sequence:

>984_bases
ATGCAGATAATCTTTGGAGAAAAATGCGTGTTATTACTACGACTATTTTTTGCCGCCGTCTTAATGCTATGGTGCGCTCA
AACTGCTGCTTATATCGGGCAGTGTCATACCACTCAGGGGAATCCGTATATTGGCGTCAATTTTGGCGTTAAAACTCTGG
ATGAAGAAGAAAATACGGCTGGAGTAGTTAAAGACAAATTTTATCAGTGGAACGAATCGAATGATTATTATGTTTCCTGT
GATTGCGATAAAGACAATGTCAGAAGTGGCCGATGGGCATTCGCCGCGGATTCACCGTTAGTCTATTTAGGCGACAACTG
GTACAAAATTAATGACTATCTTGCCGCCAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAA
ACGTGGGCACAGGGGCAGATACACGATGGCATATTTGCGATCCCGGCGGTCAACGTTTAGGTGGCCAGGGGGCTAGCGGT
AATAGCGGTAGCTTTTCCCTGAAAATATTGCAGCCGTTCGTTGGTTCGGTCGTCATTCCTCCTATGGCGCTGGCGCGATT
ATTTGAATGCTACAACATACCCGCAGGTGATTCCTGCACGACTACTGGTACACCGGTTTTAGTGTATTACCTGTCTGGTA
CGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAAACAATCGAGGTTGATCTGGGCGACGTATTTGCGGCTAAC
TTTCGTGTTGTAGGGCATAAGCCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCGGTCAGGTGTAACACGGGAAACGC
AGGGTTAGTTAACGTCAATCTGAGTCTGACGGCAACCTCAGACCCCAGCTATCCCCAGGCGATTAAGACGTCACGTCCTG
GCGTGGGCGTGGTGGTGACCGATAGCCAGCACAACATTATTTCCCCTGCTGGTGGGACACTACCGCTCTCTATTCCTGAT
GATGCAGACAGTATCCGCGAATGA

Upstream 100 bases:

>100_bases
TAACTGTACGCTGGGGCGAAGCTCCCGATCAAATTTGTCATATCAGTTACCAGCTTACCGAACAACAAATTAACTCTGCG
ATTACGCGAATGGATGCCAT

Downstream 100 bases:

>100_bases
ATGTCTATCCAGTCAGCACGACAGGCGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTT
GATTAACGCGTGAACGTATG

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MQIIFGEKCVLLLRLFFAAVLMLWCAQTAAYIGQCHTTQGNPYIGVNFGVKTLDEEENTAGVVKDKFYQWNESNDYYVSC
DCDKDNVRSGRWAFAADSPLVYLGDNWYKINDYLAAKVLLQVKGSSPTAVPFENVGTGADTRWHICDPGGQRLGGQGASG
NSGSFSLKILQPFVGSVVIPPMALARLFECYNIPAGDSCTTTGTPVLVYYLSGTINSLGSCSVNAGETIEVDLGDVFAAN
FRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSLTATSDPSYPQAIKTSRPGVGVVVTDSQHNIISPAGGTLPLSIPD
DADSIRE

Sequences:

>Translated_327_residues
MQIIFGEKCVLLLRLFFAAVLMLWCAQTAAYIGQCHTTQGNPYIGVNFGVKTLDEEENTAGVVKDKFYQWNESNDYYVSC
DCDKDNVRSGRWAFAADSPLVYLGDNWYKINDYLAAKVLLQVKGSSPTAVPFENVGTGADTRWHICDPGGQRLGGQGASG
NSGSFSLKILQPFVGSVVIPPMALARLFECYNIPAGDSCTTTGTPVLVYYLSGTINSLGSCSVNAGETIEVDLGDVFAAN
FRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSLTATSDPSYPQAIKTSRPGVGVVVTDSQHNIISPAGGTLPLSIPD
DADSIRE
>Mature_327_residues
MQIIFGEKCVLLLRLFFAAVLMLWCAQTAAYIGQCHTTQGNPYIGVNFGVKTLDEEENTAGVVKDKFYQWNESNDYYVSC
DCDKDNVRSGRWAFAADSPLVYLGDNWYKINDYLAAKVLLQVKGSSPTAVPFENVGTGADTRWHICDPGGQRLGGQGASG
NSGSFSLKILQPFVGSVVIPPMALARLFECYNIPAGDSCTTTGTPVLVYYLSGTINSLGSCSVNAGETIEVDLGDVFAAN
FRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSLTATSDPSYPQAIKTSRPGVGVVVTDSQHNIISPAGGTLPLSIPD
DADSIRE

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787173, Length=325, Percent_Identity=97.5384615384615, Blast_Score=654, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34860; Mature: 34860

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIIFGEKCVLLLRLFFAAVLMLWCAQTAAYIGQCHTTQGNPYIGVNFGVKTLDEEENTA
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCEECCCCCCCC
GVVKDKFYQWNESNDYYVSCDCDKDNVRSGRWAFAADSPLVYLGDNWYKINDYLAAKVLL
CEEEHHEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCEEEECCCEEEEHHHEEEEEEE
QVKGSSPTAVPFENVGTGADTRWHICDPGGQRLGGQGASGNSGSFSLKILQPFVGSVVIP
EECCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECHHHCCEECC
PMALARLFECYNIPAGDSCTTTGTPVLVYYLSGTINSLGSCSVNAGETIEVDLGDVFAAN
HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEE
FRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSLTATSDPSYPQAIKTSRPGVGVVVT
EEEEECCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHCCCCCEEEEEE
DSQHNIISPAGGTLPLSIPDDADSIRE
CCCCCEECCCCCEEEEECCCCHHHHCC
>Mature Secondary Structure
MQIIFGEKCVLLLRLFFAAVLMLWCAQTAAYIGQCHTTQGNPYIGVNFGVKTLDEEENTA
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCEECCCCCCCC
GVVKDKFYQWNESNDYYVSCDCDKDNVRSGRWAFAADSPLVYLGDNWYKINDYLAAKVLL
CEEEHHEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCEEEECCCEEEEHHHEEEEEEE
QVKGSSPTAVPFENVGTGADTRWHICDPGGQRLGGQGASGNSGSFSLKILQPFVGSVVIP
EECCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECHHHCCEECC
PMALARLFECYNIPAGDSCTTTGTPVLVYYLSGTINSLGSCSVNAGETIEVDLGDVFAAN
HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEE
FRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSLTATSDPSYPQAIKTSRPGVGVVVT
EEEEECCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHCCCCCEEEEEE
DSQHNIISPAGGTLPLSIPDDADSIRE
CCCCCEECCCCCEEEEECCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]