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The map label for this gene is ycbS

Identifier: 30062477

GI number: 30062477

Start: 990248

End: 992848

Strand: Direct

Name: ycbS

Synonym: S1006

Alternate gene names: 30062477

Gene position: 990248-992848 (Clockwise)

Preceding gene: 30062474

Following gene: 30062478

Centisome position: 21.53

GC content: 47.83

Gene sequence:

>2601_bases
ATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGT
GTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATT
TGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGAT
ACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATGCAAT
GGGTGTTAATACTGATGCGTTTCCGGCTTTTAAACAACTGGACAAACAAGTGTGTGTGCCATTGGCGGAGATTATTCCGG
ATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGT
GGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTAT
TCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGAT
TACGCAACAATTCAACATGGAGTCGCAGTAGTGGCCAAACCGCAGAATGGAAGAATCTCAGCAGCTATTTGCAGCGGGCG
GTTATTCCACTAAAAGGCGAACTGACCGTAGGTGATGATTATACTGCAGGCGATTTTTTCGATAGTGTCAGCTTTCGTGG
TGTGCAGCTGGCGTCAGATGACAACATGCTGCCAGACAGCCTGAAAGGGTTTGCGCCTGTGGTGCGTGGTATCGCCAAAA
GCAATGCCCAGATAACGATTAAGCAAAATGGTTACACCATTTACCAAACTTATGTATCGCCTGGTGCTTTTGAAATTAGT
GATCTCTATTCCACGTCGTCGAGCGGTGATTTGTTAGTTGAAATCAAAGAAGCGGACGGCAGCGTCAATAGCTACAGCGT
ACCGTTTTCCAGCGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATA
GTAATGAACAGCAGGAGAGCAAATTTGCCCAGACCACGTTGCAGTGGGGCGGACCGTGGGGAACGACATGGTATGGTGGT
GGACAATATGCTGAATATTACCGTGCCGCCATGTTTGGTCTGGGATTTAACCTTGGCGATTTCGGAGCAATTTCGTTCGA
TGCGACCCAGGCGAAGAGTACGCTGGCAGACCAAAGCGAACATAAAGGTCAGTCATATCGTTTTCTGTATGCCAAAACGC
TCAACCAATTGGGCACTAATTTTCAATTGATGGGCTATCGCTATTCGACGTCGGGTTTCTACACCCTTTCCGACACCATG
TATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTT
TTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCC
AGCAAACTTACTGGCATACCGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTCTCGCTG
GGGGTTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCACTAAATTTTTCCCTGCCGCT
CAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCG
ATAACGAAGGGCACATTACACAAAACCTGGGTTTAACGGAGACACTACTCGATGACGGTAACCTGAGCTACAGCGTGCAA
CAGGGATATAACAGCGAGGGGAAAACGGCTAATGGTAGCGCCAGCATGGACTACAAAGGGGCGTTTGCAGATGCCCGAGT
GGGCTACAACTACAGCGATAACGGCAGTCAACAACAACTGAACTACGCTCTTTCAGGCAGTTTAGTTGCCCATTCACAGG
GCATTACCCTGGGGCAATCGCTGGGGGAAACTAACGTGCTGATTGCAGCACCAGGCGCAGAGAATACTCGTGTGGCGAAC
AGCACCGGGCTGAAAACTGACTGGCGCGGATATACCGTTGTCCCCTATGCCACTTCTTATCGGGAAAATCGAATCGCACT
TGATGCGGCATCGTTAAAACGTAACGTGGATCTTGAAAATGCAGTAGTCAACGTGGTTCCCACCAAAGGGGCGTTGGTTC
TGGCGGAGTTCAATGCCCATGCGGGAGCAAGGGTATTAATGAAAACATCAAAGCAGGGTATACCGCTGCGTTTTGGCGCG
ATAGCGACGCTGGACGGCATACAGACTAATAGCGGCATTATTGATGATGATGGCTCGCTCTATATGTCCGGTTTGCCCGC
TCAGGGAGCGATAACTGTACGCTGGGGCGAAGCTCCCGATCAAATTTGTCATATCAGTTACCAGCTTACCGAACAACAAA
TTAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAA

Upstream 100 bases:

>100_bases
AGTTGGCAGCATTACCACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCG
TCTTCAGTTAAGAGAGCGAG

Downstream 100 bases:

>100_bases
TCTTTGGAGAAAAATGCGTGTTATTACTACGACTATTTTTTGCCGCCGTCTTAATGCTATGGTGCGCTCAAACTGCTGCT
TATATCGGGCAGTGTCATAC

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 866; Mature: 866

Protein sequence:

>866_residues
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQVCVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQTTLQWGGPWGTTWYGG
GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRFGA
IATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAITRMDAICR

Sequences:

>Translated_866_residues
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQVCVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQTTLQWGGPWGTTWYGG
GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRFGA
IATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAITRMDAICR
>Mature_866_residues
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQVCVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQTTLQWGGPWGTTWYGG
GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRFGA
IATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAITRMDAICR

Specific function: Could be involved in the export and assembly of the putative ycbQ fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=866, Percent_Identity=98.4988452655889, Blast_Score=1766, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=857, Percent_Identity=48.8914819136523, Blast_Score=822, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=850, Percent_Identity=45.0588235294118, Blast_Score=748, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=870, Percent_Identity=38.6206896551724, Blast_Score=553, Evalue=1e-158,
Organism=Escherichia coli, GI1786332, Length=858, Percent_Identity=32.2843822843823, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI1788427, Length=823, Percent_Identity=30.9842041312272, Blast_Score=353, Evalue=4e-98,
Organism=Escherichia coli, GI87081778, Length=857, Percent_Identity=26.7211201866978, Blast_Score=247, Evalue=2e-66,
Organism=Escherichia coli, GI1789610, Length=694, Percent_Identity=25.5043227665706, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 95306; Mature: 95306

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKG
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
QKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQL
CCCCCCEEEEEEEEECEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
DKQVCVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGYS
HHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEECCCCCCCCHHHHHCCCEEEEEEEE
FSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHC
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITI
CCCCCCEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
KQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGR
EECCEEEEEEECCCCCEEEHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHCCC
IKYAVTLAKYRTNSNEQQESKFAQTTLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGD
EEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
FGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
CCEEEECCHHHHHHHHCCHHCCCCCEEEEHHHHHHHHCCCEEEEEEEECCCCEEEEHHHH
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHT
HHHCCCCCCCCCCCCCCCHHHHHEEEEEEECCCEEEEHHHHCCCCCCEEEECCCCEEEEC
DQQDRLLQFGYNTQIKDLSLGVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTR
CCHHHHEECCCCCCEEEEEEEEEECCHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
KKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKG
CCCEEEEECCCCCCCCCCEEECCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
AFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
CCCCCEECCCCCCCCCHHHEEEEECCCEEEECCCCEECCCCCCCEEEEECCCCCCCEEEC
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAH
CCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHCCCCCCCEEEEEEECCCEEEEEECCCC
AGARVLMKTSKQGIPLRFGAIATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPD
CCEEEEEECCCCCCCEEECCEEEECCCCCCCCEEECCCCEEEECCCCCCEEEEEECCCCC
QICHISYQLTEQQINSAITRMDAICR
CEEEEEEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKG
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
QKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQL
CCCCCCEEEEEEEEECEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
DKQVCVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGYS
HHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEECCCCCCCCHHHHHCCCEEEEEEEE
FSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHC
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITI
CCCCCCEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
KQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGR
EECCEEEEEEECCCCCEEEHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHCCC
IKYAVTLAKYRTNSNEQQESKFAQTTLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGD
EEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
FGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
CCEEEECCHHHHHHHHCCHHCCCCCEEEEHHHHHHHHCCCEEEEEEEECCCCEEEEHHHH
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHT
HHHCCCCCCCCCCCCCCCHHHHHEEEEEEECCCEEEEHHHHCCCCCCEEEECCCCEEEEC
DQQDRLLQFGYNTQIKDLSLGVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTR
CCHHHHEECCCCCCEEEEEEEEEECCHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
KKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKG
CCCEEEEECCCCCCCCCCEEECCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
AFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
CCCCCEECCCCCCCCCHHHEEEEECCCEEEECCCCEECCCCCCCEEEEECCCCCCCEEEC
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAH
CCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHCCCCCCCEEEEEEECCCEEEEEECCCC
AGARVLMKTSKQGIPLRFGAIATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPD
CCEEEEEECCCCCCCEEECCEEEECCCCCCCCEEECCCCEEEECCCCCCEEEEEECCCCC
QICHISYQLTEQQINSAITRMDAICR
CEEEEEEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]