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The map label for this gene is ycbU [H]

Identifier: 30062479

GI number: 30062479

Start: 993920

End: 994462

Strand: Direct

Name: ycbU [H]

Synonym: S1008

Alternate gene names: 30062479

Gene position: 993920-994462 (Clockwise)

Preceding gene: 30062478

Following gene: 30062480

Centisome position: 21.61

GC content: 47.15

Gene sequence:

>543_bases
ATGAAGAAAAAAACGATATATCAGTGCGTTATTTTGTTCTTTAGCCTTCTTAACATCCATGTCGGGATGGCTGGGCCTGA
ACAAGTCAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTC
ATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATTGATATCACC
GGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACT
AACTGACACAGGCGGAAGCGGTGGTATGGCAACGGGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCC
CGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACA
AAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGA

Upstream 100 bases:

>100_bases
TGAATGTCTATCCAGTCAGCACGACAGGCGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAAT
TTTGATTAACGCGTGAACGT

Downstream 100 bases:

>100_bases
AGGAGTGATGTTGAAACGGATAATCTGGATTCTGTTCTTACTGGGATTAACGGGGGGCTGTGAGCTATTTGCCCATGATG
GCACGGTCAACATTAGCGGA

Product: putative fimbrial-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKKKTIYQCVILFFSLLNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDIT
GCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKST
KAGATGGNATAVLYFDLVYQ

Sequences:

>Translated_180_residues
MKKKTIYQCVILFFSLLNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDIT
GCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKST
KAGATGGNATAVLYFDLVYQ
>Mature_180_residues
MKKKTIYQCVILFFSLLNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDIT
GCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKST
KAGATGGNATAVLYFDLVYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787174, Length=180, Percent_Identity=98.8888888888889, Blast_Score=363, Evalue=1e-102,
Organism=Escherichia coli, GI1787781, Length=156, Percent_Identity=32.6923076923077, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790773, Length=186, Percent_Identity=29.0322580645161, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18930; Mature: 18930

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTIYQCVILFFSLLNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNI
CCCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEEECCCCCCHHHHHHHHEECCCCCCC
SDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGI
CCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCHHCCEEEEEEECCCCCCCCCCE
AVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ
EEEEECCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MKKKTIYQCVILFFSLLNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNI
CCCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEEECCCCCCHHHHHHHHEECCCCCCC
SDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGI
CCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCHHCCEEEEEEECCCCCCCCCCE
AVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ
EEEEECCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]