Click here to switch to the map view.

The map label for this gene is sfmC

Identifier: 30062015

GI number: 30062015

Start: 477297

End: 477989

Strand: Direct

Name: sfmC

Synonym: S0470

Alternate gene names: 30062015

Gene position: 477297-477989 (Clockwise)

Preceding gene: 30062014

Following gene: 30062022

Centisome position: 10.38

GC content: 43.15

Gene sequence:

>693_bases
ATGATGACTAAAATAAAGTTATTGATGCTCATGATATTTTATTTAATCATTTCGGCCAGCGCCCATGCTGCCGGAGGGAT
CGCATTAGGTGCCACGCGTATTATTTATCCCGCTGATGCTAAACAGACTGCGGTATGGATTAAAAATAGCCATACCAATG
AGCTCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTATTT
GTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCGGCAGATCGTGAGTCTCTGTT
CTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTAT
CGCGCATGAAATTATTTCTCCGTCCAATTCAATTACAAGAATTACCCGCAGAAGCGCCGGACACACTCAAGTTTTCGCGA
TCCGGTAACTATATCAATGTTCATAATCCATCACCTTTTTATGTCACCCTCGTTAACCTGCAAGTGGGCAGCCAAAAGTT
GGGGAATGCTATGGCGGCACCCAGAGTTAGTTCACAAATTCCCTTACCCTCAGGAGTGCAGGGAAAGCTGAAATTTCAGA
CCGTTAATGATTATGGTTCAGTAACCCCGGTCAGAGAAGTGAACTTAAACTAA

Upstream 100 bases:

>100_bases
TTATTAAATGAAAAGGGAATGATGTGTTGTAAGAAGCCAAAGCAATCATTTCTTTATACTCCTTATTTTTGCCGTCAGGA
ATACACAAGGCGTATTAACT

Downstream 100 bases:

>100_bases
CCGAATCATCTGACAATATCAGAGCTAATTATGAAAATACCCACTACTACGGATATTCCGCAGAGGTATACCTGGTGTCT
GGCCGGAATTTGTTATTCAT

Product: putative chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MMTKIKLLMLMIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIKNSHTNELFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

Sequences:

>Translated_230_residues
MMTKIKLLMLMIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIKNSHTNELFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>Mature_230_residues
MMTKIKLLMLMIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIKNSHTNELFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

Specific function: Required for the biogenesis of sfmA fimbriae. Binds and interact with sfmH [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786743, Length=230, Percent_Identity=98.2608695652174, Blast_Score=461, Evalue=1e-131,
Organism=Escherichia coli, GI1790771, Length=218, Percent_Identity=46.3302752293578, Blast_Score=208, Evalue=2e-55,
Organism=Escherichia coli, GI1787171, Length=207, Percent_Identity=40.0966183574879, Blast_Score=163, Evalue=9e-42,
Organism=Escherichia coli, GI1789532, Length=220, Percent_Identity=35, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1786333, Length=239, Percent_Identity=31.7991631799163, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786936, Length=233, Percent_Identity=34.3347639484979, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI87081806, Length=236, Percent_Identity=27.5423728813559, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788677, Length=208, Percent_Identity=33.6538461538462, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788428, Length=221, Percent_Identity=30.316742081448, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082203, Length=170, Percent_Identity=32.9411764705882, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25378; Mature: 25378

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTKIKLLMLMIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIKNSHTNELFLVNS
CCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEECCCCCEEEEEECCCCCEEEEEEE
WIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKN
CCCCCCCCCCCEEEECCCCEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCC
ALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNL
CCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCEEEECCCCCEEEEEEEE
QVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
EECCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCC
>Mature Secondary Structure
MMTKIKLLMLMIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIKNSHTNELFLVNS
CCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEECCCCCEEEEEECCCCCEEEEEEE
WIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKN
CCCCCCCCCCCEEEECCCCEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCC
ALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNL
CCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCEEEECCCCCEEEEEEEE
QVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
EECCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]