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The map label for this gene is sfmA

Identifier: 30062014

GI number: 30062014

Start: 476502

End: 477077

Strand: Direct

Name: sfmA

Synonym: S0469

Alternate gene names: 30062014

Gene position: 476502-477077 (Clockwise)

Preceding gene: 30062010

Following gene: 30062015

Centisome position: 10.36

GC content: 43.75

Gene sequence:

>576_bases
GTGGAGTCGATAAATGAGATTGAAGGAATATATATGAAATTAAGATTTATTTCGTCTGCGCTGGCTGCCGCACTATTCGC
CGCTACGGGTAGTTATGCTGCCGTTGTAGATGGCGGTACAATTCACTTTGAAGGCGAACTGGTGAATGCTGCCTGTTCAG
TGAATACTGACTCGGCAGACCAGGTTGTCACACTCGGTCAATATCGTACCGATATTTTCAATGCTGTTGGTAATACCTCT
GCATTAATTCCATTCACCATTCAGTTGAACGACTGCGATCCTGTTGTTGCCGCTAATGCTGCCGTTGCATTTTCTGGTCA
GGCTGATGCAATCAATGATAATTTATTGGCCATTGTATCCAGTACAAATACAACAACAGCAACGGGTGTCGGTATTGAAA
TACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAACTTGATCCCCGGGACCAAC
GTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTAT
TATGAGATACGAATAA

Upstream 100 bases:

>100_bases
TAGAATAGAGTGCATATTTTCAATTAAGACATTCTTAGAGGATAAAAAGGAATTTTACTACTATCAGTGTCTTAAATAAA
GTAATCGGTTATATACGGAT

Downstream 100 bases:

>100_bases
TCAAAACCACGTTGTTTTGAATTATATATCACGTCTTATAACAAAGTAATGTACCGGTTGTCTGAAGCGGTATGGTGGCA
ATGTAAATCGAAACCACGTT

Product: putative fimbrial-like protein

Products: NA

Alternate protein names: Type-1A pilin [H]

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MESINEIEGIYMKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTS
ALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIVSSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTN
VLHFSARYKGTGTSASAGQANADATFIMRYE

Sequences:

>Translated_191_residues
MESINEIEGIYMKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTS
ALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIVSSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTN
VLHFSARYKGTGTSASAGQANADATFIMRYE
>Mature_191_residues
MESINEIEGIYMKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTS
ALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIVSSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTN
VLHFSARYKGTGTSASAGQANADATFIMRYE

Specific function: Fimbriae (also called pili), polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, enable bacteria to colonize the epithelium of specific host organs [H]

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI87081753, Length=180, Percent_Identity=99.4444444444444, Blast_Score=357, Evalue=1e-100,
Organism=Escherichia coli, GI1790769, Length=157, Percent_Identity=52.2292993630573, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI87082421, Length=182, Percent_Identity=31.3186813186813, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787781, Length=166, Percent_Identity=33.7349397590361, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1790773, Length=173, Percent_Identity=34.6820809248555, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1786746, Length=176, Percent_Identity=29.5454545454545, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787174, Length=156, Percent_Identity=30.7692307692308, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 19782; Mature: 19782

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESINEIEGIYMKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECEEEEEEEECCCCCCC
QVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIVS
CEEEECHHHHHHHHHCCCCCEEEEEEEEECCCCCEEECCEEEEECCCCCCCCCCEEEEEE
STNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQA
CCCCCEECCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCC
NADATFIMRYE
CCCEEEEEEEC
>Mature Secondary Structure
MESINEIEGIYMKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECEEEEEEEECCCCCCC
QVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIVS
CEEEECHHHHHHHHHCCCCCEEEEEEEEECCCCCEEECCEEEEECCCCCCCCCCEEEEEE
STNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQA
CCCCCEECCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCC
NADATFIMRYE
CCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]