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The map label for this gene is 29350076

Identifier: 29350076

GI number: 29350076

Start: 6118695

End: 6119756

Strand: Reverse

Name: 29350076

Synonym: BT_4668

Alternate gene names: NA

Gene position: 6119756-6118695 (Counterclockwise)

Preceding gene: 29350077

Following gene: 29350075

Centisome position: 97.75

GC content: 46.33

Gene sequence:

>1062_bases
ATGAAAATAGCAAGCATATTATCAATAGTAGCACTCATTGCTTCAATGGCTACAAACGGGTGTAGTGAAGATGGCCCGGT
TACAAATCCTCGTCAAGAAGAACCGCAAAAGGTTGTAAAAGAAGAAGGCTTTGCACGTGGTGCAGACGTAAGTTGGCTGA
CTCAAATGGAAGCGGAAGGACTCAAGTTCTACACGCCGGACGAGAATCGCCAAGAGATGGAGTGTATGGACCTCTTGCGT
GATTATTGCGGAGTCAACTCTATCCGTCTTCGTGTATGGGTTAACCCGAAAGACGGCTGGAACAACATGAATGACGTAAT
AGTGAAAGCAAAACGTGCCGAGCGTCTGGGATTACGTACGATGATCGACTTCCATTTTTCTGATACCTGGGCCGACCCCG
GACATCAGGAAATGCCGGAGGCGTGGAAAGAGCTTTCATTTGATGATCTCAAAATTGCTCTCAGCGAACATGTGAAATCA
GTTCTTACCGCGTTAAAAGCGGTTGGGGTTACACCGGAATGGGTACAGGTAGGTAATGAAACAACTCCCGGCATGATGCT
TCCTGTGGGGTCTGTTGATAATCCCGAACAACTGACTGCACTCAACAATGCGGGATATGATGCCGTGAAAGCTATATGTC
CCGACGCCAAAGTCATTGTCCACCTGGACGCGGGAAACGACCAATGGGTATACAACCGCATGTTCGACATTCTTCAAGCC
AATGGAGGTAAATACGACATGATAGGCATGTCGCTCTATCCATATTGGGCAGAGCAGGAAGGCAAAACCGGTGGTTGGCT
GAAAGTAGCCGATGACTGTATTGCCAATATCAAGCATGTCAAGCAGAAATACAACAAACCTGTCATGATTTGCGAGATAG
GTATGCCTTATGATCAGGCAGAGGCCTGCAAACAACTCATTACAAAAATGATGCAAGCCGATGTGGAAGGTATCTTCTAT
TGGGAGCCACAAGCCCCGAATGGCTATAATGACGGTTATAACCTAGGCTGTTTCGATAATAATGCGCCTACAATTGCACT
AGATGCTTTTAAAATCCAATAA

Upstream 100 bases:

>100_bases
TTTGACGGAGACGATGAACTCGAAATAGGCAAAACCTATGTCCTTACCGTTGATTTGGGACACCAAACTTATTCTTACTC
ACTTAAATAAATCAGTTTCA

Downstream 100 bases:

>100_bases
AAAAGTGAGAATGAACATGAAACACCAGAAACAGTTGTTTACTGTACTTTTGATGAGCGCAGCCTGTATGCTACAGGCAC
AGCGCAGCGAGACGCTGCTT

Product: arabinogalactan endo-1,4-beta-galactosidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKIASILSIVALIASMATNGCSEDGPVTNPRQEEPQKVVKEEGFARGADVSWLTQMEAEGLKFYTPDENRQEMECMDLLR
DYCGVNSIRLRVWVNPKDGWNNMNDVIVKAKRAERLGLRTMIDFHFSDTWADPGHQEMPEAWKELSFDDLKIALSEHVKS
VLTALKAVGVTPEWVQVGNETTPGMMLPVGSVDNPEQLTALNNAGYDAVKAICPDAKVIVHLDAGNDQWVYNRMFDILQA
NGGKYDMIGMSLYPYWAEQEGKTGGWLKVADDCIANIKHVKQKYNKPVMICEIGMPYDQAEACKQLITKMMQADVEGIFY
WEPQAPNGYNDGYNLGCFDNNAPTIALDAFKIQ

Sequences:

>Translated_353_residues
MKIASILSIVALIASMATNGCSEDGPVTNPRQEEPQKVVKEEGFARGADVSWLTQMEAEGLKFYTPDENRQEMECMDLLR
DYCGVNSIRLRVWVNPKDGWNNMNDVIVKAKRAERLGLRTMIDFHFSDTWADPGHQEMPEAWKELSFDDLKIALSEHVKS
VLTALKAVGVTPEWVQVGNETTPGMMLPVGSVDNPEQLTALNNAGYDAVKAICPDAKVIVHLDAGNDQWVYNRMFDILQA
NGGKYDMIGMSLYPYWAEQEGKTGGWLKVADDCIANIKHVKQKYNKPVMICEIGMPYDQAEACKQLITKMMQADVEGIFY
WEPQAPNGYNDGYNLGCFDNNAPTIALDAFKIQ
>Mature_353_residues
MKIASILSIVALIASMATNGCSEDGPVTNPRQEEPQKVVKEEGFARGADVSWLTQMEAEGLKFYTPDENRQEMECMDLLR
DYCGVNSIRLRVWVNPKDGWNNMNDVIVKAKRAERLGLRTMIDFHFSDTWADPGHQEMPEAWKELSFDDLKIALSEHVKS
VLTALKAVGVTPEWVQVGNETTPGMMLPVGSVDNPEQLTALNNAGYDAVKAICPDAKVIVHLDAGNDQWVYNRMFDILQA
NGGKYDMIGMSLYPYWAEQEGKTGGWLKVADDCIANIKHVKQKYNKPVMICEIGMPYDQAEACKQLITKMMQADVEGIFY
WEPQAPNGYNDGYNLGCFDNNAPTIALDAFKIQ

Specific function: Unknown

COG id: COG3867

COG function: function code G; Arabinogalactan endo-1,4-beta-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 53 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011683
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07745 Glyco_hydro_53 [H]

EC number: NA

Molecular weight: Translated: 39517; Mature: 39517

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIASILSIVALIASMATNGCSEDGPVTNPRQEEPQKVVKEEGFARGADVSWLTQMEAEG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCC
LKFYTPDENRQEMECMDLLRDYCGVNSIRLRVWVNPKDGWNNMNDVIVKAKRAERLGLRT
CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHEEHHHHHHHCCHH
MIDFHFSDTWADPGHQEMPEAWKELSFDDLKIALSEHVKSVLTALKAVGVTPEWVQVGNE
EEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
TTPGMMLPVGSVDNPEQLTALNNAGYDAVKAICPDAKVIVHLDAGNDQWVYNRMFDILQA
CCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC
NGGKYDMIGMSLYPYWAEQEGKTGGWLKVADDCIANIKHVKQKYNKPVMICEIGMPYDQA
CCCCEEEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH
EACKQLITKMMQADVEGIFYWEPQAPNGYNDGYNLGCFDNNAPTIALDAFKIQ
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEECEECCCCCEEEEEEEEEC
>Mature Secondary Structure
MKIASILSIVALIASMATNGCSEDGPVTNPRQEEPQKVVKEEGFARGADVSWLTQMEAEG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCC
LKFYTPDENRQEMECMDLLRDYCGVNSIRLRVWVNPKDGWNNMNDVIVKAKRAERLGLRT
CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHEEHHHHHHHCCHH
MIDFHFSDTWADPGHQEMPEAWKELSFDDLKIALSEHVKSVLTALKAVGVTPEWVQVGNE
EEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
TTPGMMLPVGSVDNPEQLTALNNAGYDAVKAICPDAKVIVHLDAGNDQWVYNRMFDILQA
CCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC
NGGKYDMIGMSLYPYWAEQEGKTGGWLKVADDCIANIKHVKQKYNKPVMICEIGMPYDQA
CCCCEEEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH
EACKQLITKMMQADVEGIFYWEPQAPNGYNDGYNLGCFDNNAPTIALDAFKIQ
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEECEECCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA