| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29350077
Identifier: 29350077
GI number: 29350077
Start: 6119767
End: 6121479
Strand: Reverse
Name: 29350077
Synonym: BT_4669
Alternate gene names: NA
Gene position: 6121479-6119767 (Counterclockwise)
Preceding gene: 29350078
Following gene: 29350076
Centisome position: 97.78
GC content: 45.24
Gene sequence:
>1713_bases ATGAAAGTTTTTAGTACAATAGTTAAATTGATATTATTGTCAGCTGTTATGACAGTAGCTACCACCTCCTGTGATAGCGA TATTGATCCGGTTTACGTCTTGTCCGGAGACTCTATGGAATTGATGGGGGGCCCGAATGAAGTTATTCTTACGCCAGACA ATCCGCAGGCTTTGGCATTGACAGTTTATTGGAGTGGCGACGGACGTTTGGCGCTTAGTGATACACTTTTGCAAGCTCCG GTGAATGTTGCGGAAATAACGATTCAGTTCTCAAAGGATGAACACTTTACTGCTCCGTTAAATATTGCGGTGGATAAGAA TATCCATTCCCGTCAATTTCTTTGCGAGGAGCTTAATTCTCTGCTTGATCGTTTAGGTTATGAGGCCAATGAGAAGGCTC CGTTATGGATTCGGATGCGTTCGGCATTGGCAGCCAACATCGCTCCCGAATACTCTAATGTCATGGAGGTTCTGGTCCAG TCTTATCGCATTGAGCTTGTCTTGGCTCAAGTACTTGACAAGGACTGGAAGAACACATCTATGACGCTTGCCTCTCCTGC TGAAGACGGCATTTATAAAGGTTTTATGGGCGTCAACGGATGGGAAAACTGGTGGCTTCGCGAAGCCAATAATGTAATGT GGGGTAATCTTGGTGAAGAAGGAAAGACATTTTATGCTTCATCGGAAGACAGTCACTGGAACTTTTGGTTCCCGAATCCG TCAGGATGCTATTACACTACCGTAAACACGGTTGAAGGATGGTGGAGTGCACTGCATGTTGCCAGTCTGTCAGTTAGTGG AGATGTAACGGGCGAAATGGCTTACAACAAGCAGAGCAATCAATGGACACTGCCGGTAAATCTGGCAACACAATCTACCC TGACCATTTCCGTATCAGGAAAGGGTAGCCTGTACAACCGGGAAACAACCGATATAGGACCTGCTATTGAGCAAACTGTC GCATTTGGCGGCAATTCACAAAACCTCTTGTTCGGTGAGAGTGCAGATAATATTTCTGTAACTATGCCCGCCGGAGAAAA TCTCCTGGTTCTTGATTTATCCAATCCTCTTCAATTTACCATCGGCATCGGAGAAGACGTTCCGCAGCCGGAAGTCTCTC AGTATCTGTACTTCTCCGGCATAACCAATTGGGAAGGTTTTGACGATTACCTCACTTTATACGATGAAGCCGGACTTTGC TATGGTGGTGCACATTGGATAGATTCTGAATGGGGATATCGTGCATATACTGAACAAGCATGGGAGCCCGCCTATAATGC AGCCGATGGCTCTACCGACTTGTCCGGCACATTGATCCTTGCAGAGTCTAAAGACAACATTCCCGCACCGGCACAAGGGC TGTATGTTATGGATTTCAACATGAAGTCATTGACCTATGAACTGACTCAAGTGCAGACTGTGACATTTACCGGACTTAAC GATAATTGGTCTGAATCCCCCATGACACAGTCTGCAGAAAATCCAGAGATATTTACAGCCGAGTTCATTAAAGAAAAGAA AAGTCCTTGGGGAGTAAAAGTGCTGATAAATAACAACTGGAACCTTTTCTTCGGCGGTGGTTCCGGCATTCTGCACCTGA AGCATTCTGAATCCTCAGCAGGATTTGACGGAGACGATGAACTCGAAATAGGCAAAACCTATGTCCTTACCGTTGATTTG GGACACCAAACTTATTCTTACTCACTTAAATAA
Upstream 100 bases:
>100_bases GCCGTGCCGTGAACAAAAAATATAATATTTATCCCATTCCTGATACAGATCTTACAGCCAATCCTAATCTACATAATCCA CTCTATTAAAAAGATACGAT
Downstream 100 bases:
>100_bases ATCAGTTTCAATGAAAATAGCAAGCATATTATCAATAGTAGCACTCATTGCTTCAATGGCTACAAACGGGTGTAGTGAAG ATGGCCCGGTTACAAATCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 570; Mature: 570
Protein sequence:
>570_residues MKVFSTIVKLILLSAVMTVATTSCDSDIDPVYVLSGDSMELMGGPNEVILTPDNPQALALTVYWSGDGRLALSDTLLQAP VNVAEITIQFSKDEHFTAPLNIAVDKNIHSRQFLCEELNSLLDRLGYEANEKAPLWIRMRSALAANIAPEYSNVMEVLVQ SYRIELVLAQVLDKDWKNTSMTLASPAEDGIYKGFMGVNGWENWWLREANNVMWGNLGEEGKTFYASSEDSHWNFWFPNP SGCYYTTVNTVEGWWSALHVASLSVSGDVTGEMAYNKQSNQWTLPVNLATQSTLTISVSGKGSLYNRETTDIGPAIEQTV AFGGNSQNLLFGESADNISVTMPAGENLLVLDLSNPLQFTIGIGEDVPQPEVSQYLYFSGITNWEGFDDYLTLYDEAGLC YGGAHWIDSEWGYRAYTEQAWEPAYNAADGSTDLSGTLILAESKDNIPAPAQGLYVMDFNMKSLTYELTQVQTVTFTGLN DNWSESPMTQSAENPEIFTAEFIKEKKSPWGVKVLINNNWNLFFGGGSGILHLKHSESSAGFDGDDELEIGKTYVLTVDL GHQTYSYSLK
Sequences:
>Translated_570_residues MKVFSTIVKLILLSAVMTVATTSCDSDIDPVYVLSGDSMELMGGPNEVILTPDNPQALALTVYWSGDGRLALSDTLLQAP VNVAEITIQFSKDEHFTAPLNIAVDKNIHSRQFLCEELNSLLDRLGYEANEKAPLWIRMRSALAANIAPEYSNVMEVLVQ SYRIELVLAQVLDKDWKNTSMTLASPAEDGIYKGFMGVNGWENWWLREANNVMWGNLGEEGKTFYASSEDSHWNFWFPNP SGCYYTTVNTVEGWWSALHVASLSVSGDVTGEMAYNKQSNQWTLPVNLATQSTLTISVSGKGSLYNRETTDIGPAIEQTV AFGGNSQNLLFGESADNISVTMPAGENLLVLDLSNPLQFTIGIGEDVPQPEVSQYLYFSGITNWEGFDDYLTLYDEAGLC YGGAHWIDSEWGYRAYTEQAWEPAYNAADGSTDLSGTLILAESKDNIPAPAQGLYVMDFNMKSLTYELTQVQTVTFTGLN DNWSESPMTQSAENPEIFTAEFIKEKKSPWGVKVLINNNWNLFFGGGSGILHLKHSESSAGFDGDDELEIGKTYVLTVDL GHQTYSYSLK >Mature_570_residues MKVFSTIVKLILLSAVMTVATTSCDSDIDPVYVLSGDSMELMGGPNEVILTPDNPQALALTVYWSGDGRLALSDTLLQAP VNVAEITIQFSKDEHFTAPLNIAVDKNIHSRQFLCEELNSLLDRLGYEANEKAPLWIRMRSALAANIAPEYSNVMEVLVQ SYRIELVLAQVLDKDWKNTSMTLASPAEDGIYKGFMGVNGWENWWLREANNVMWGNLGEEGKTFYASSEDSHWNFWFPNP SGCYYTTVNTVEGWWSALHVASLSVSGDVTGEMAYNKQSNQWTLPVNLATQSTLTISVSGKGSLYNRETTDIGPAIEQTV AFGGNSQNLLFGESADNISVTMPAGENLLVLDLSNPLQFTIGIGEDVPQPEVSQYLYFSGITNWEGFDDYLTLYDEAGLC YGGAHWIDSEWGYRAYTEQAWEPAYNAADGSTDLSGTLILAESKDNIPAPAQGLYVMDFNMKSLTYELTQVQTVTFTGLN DNWSESPMTQSAENPEIFTAEFIKEKKSPWGVKVLINNNWNLFFGGGSGILHLKHSESSAGFDGDDELEIGKTYVLTVDL GHQTYSYSLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62991; Mature: 62991
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVFSTIVKLILLSAVMTVATTSCDSDIDPVYVLSGDSMELMGGPNEVILTPDNPQALAL CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCCCCEEEE TVYWSGDGRLALSDTLLQAPVNVAEITIQFSKDEHFTAPLNIAVDKNIHSRQFLCEELNS EEEECCCCCEEEECHHHHCCCCEEEEEEEECCCCCEECCEEEEEECCCCHHHHHHHHHHH LLDRLGYEANEKAPLWIRMRSALAANIAPEYSNVMEVLVQSYRIELVLAQVLDKDWKNTS HHHHHCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE MTLASPAEDGIYKGFMGVNGWENWWLREANNVMWGNLGEEGKTFYASSEDSHWNFWFPNP EEEECCCCCCCEEEECCCCCCCCCEEECCCCEEECCCCCCCCEEEECCCCCCEEEECCCC SGCYYTTVNTVEGWWSALHVASLSVSGDVTGEMAYNKQSNQWTLPVNLATQSTLTISVSG CCCEEEEECCHHHHHHHHEEEEEEECCCEEEEEEECCCCCEEEEEEEEECCEEEEEEECC KGSLYNRETTDIGPAIEQTVAFGGNSQNLLFGESADNISVTMPAGENLLVLDLSNPLQFT CCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCEEEE IGIGEDVPQPEVSQYLYFSGITNWEGFDDYLTLYDEAGLCYGGAHWIDSEWGYRAYTEQA EECCCCCCCCHHHHEEEEECCCCCCCCCCCEEEECCCCEEECCCEEECCCCCCCHHHHHH WEPAYNAADGSTDLSGTLILAESKDNIPAPAQGLYVMDFNMKSLTYELTQVQTVTFTGLN CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCHHEEEEEEEEEEEEEECCC DNWSESPMTQSAENPEIFTAEFIKEKKSPWGVKVLINNNWNLFFGGGSGILHLKHSESSA CCCCCCCCCCCCCCCCEEEHHHHHHCCCCCEEEEEEECCCEEEEECCCEEEEEEECCCCC GFDGDDELEIGKTYVLTVDLGHQTYSYSLK CCCCCCCEEECCEEEEEEEECCCEEEEECC >Mature Secondary Structure MKVFSTIVKLILLSAVMTVATTSCDSDIDPVYVLSGDSMELMGGPNEVILTPDNPQALAL CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCCCCEEEE TVYWSGDGRLALSDTLLQAPVNVAEITIQFSKDEHFTAPLNIAVDKNIHSRQFLCEELNS EEEECCCCCEEEECHHHHCCCCEEEEEEEECCCCCEECCEEEEEECCCCHHHHHHHHHHH LLDRLGYEANEKAPLWIRMRSALAANIAPEYSNVMEVLVQSYRIELVLAQVLDKDWKNTS HHHHHCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE MTLASPAEDGIYKGFMGVNGWENWWLREANNVMWGNLGEEGKTFYASSEDSHWNFWFPNP EEEECCCCCCCEEEECCCCCCCCCEEECCCCEEECCCCCCCCEEEECCCCCCEEEECCCC SGCYYTTVNTVEGWWSALHVASLSVSGDVTGEMAYNKQSNQWTLPVNLATQSTLTISVSG CCCEEEEECCHHHHHHHHEEEEEEECCCEEEEEEECCCCCEEEEEEEEECCEEEEEEECC KGSLYNRETTDIGPAIEQTVAFGGNSQNLLFGESADNISVTMPAGENLLVLDLSNPLQFT CCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCEEEE IGIGEDVPQPEVSQYLYFSGITNWEGFDDYLTLYDEAGLCYGGAHWIDSEWGYRAYTEQA EECCCCCCCCHHHHEEEEECCCCCCCCCCCEEEECCCCEEECCCEEECCCCCCCHHHHHH WEPAYNAADGSTDLSGTLILAESKDNIPAPAQGLYVMDFNMKSLTYELTQVQTVTFTGLN CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCHHEEEEEEEEEEEEEECCC DNWSESPMTQSAENPEIFTAEFIKEKKSPWGVKVLINNNWNLFFGGGSGILHLKHSESSA CCCCCCCCCCCCCCCCEEEHHHHHHCCCCCEEEEEEECCCEEEEECCCEEEEEEECCCCC GFDGDDELEIGKTYVLTVDLGHQTYSYSLK CCCCCCCEEECCEEEEEEEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA