Definition Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome.
Accession NC_004663
Length 6,260,361

Click here to switch to the map view.

The map label for this gene is 29350077

Identifier: 29350077

GI number: 29350077

Start: 6119767

End: 6121479

Strand: Reverse

Name: 29350077

Synonym: BT_4669

Alternate gene names: NA

Gene position: 6121479-6119767 (Counterclockwise)

Preceding gene: 29350078

Following gene: 29350076

Centisome position: 97.78

GC content: 45.24

Gene sequence:

>1713_bases
ATGAAAGTTTTTAGTACAATAGTTAAATTGATATTATTGTCAGCTGTTATGACAGTAGCTACCACCTCCTGTGATAGCGA
TATTGATCCGGTTTACGTCTTGTCCGGAGACTCTATGGAATTGATGGGGGGCCCGAATGAAGTTATTCTTACGCCAGACA
ATCCGCAGGCTTTGGCATTGACAGTTTATTGGAGTGGCGACGGACGTTTGGCGCTTAGTGATACACTTTTGCAAGCTCCG
GTGAATGTTGCGGAAATAACGATTCAGTTCTCAAAGGATGAACACTTTACTGCTCCGTTAAATATTGCGGTGGATAAGAA
TATCCATTCCCGTCAATTTCTTTGCGAGGAGCTTAATTCTCTGCTTGATCGTTTAGGTTATGAGGCCAATGAGAAGGCTC
CGTTATGGATTCGGATGCGTTCGGCATTGGCAGCCAACATCGCTCCCGAATACTCTAATGTCATGGAGGTTCTGGTCCAG
TCTTATCGCATTGAGCTTGTCTTGGCTCAAGTACTTGACAAGGACTGGAAGAACACATCTATGACGCTTGCCTCTCCTGC
TGAAGACGGCATTTATAAAGGTTTTATGGGCGTCAACGGATGGGAAAACTGGTGGCTTCGCGAAGCCAATAATGTAATGT
GGGGTAATCTTGGTGAAGAAGGAAAGACATTTTATGCTTCATCGGAAGACAGTCACTGGAACTTTTGGTTCCCGAATCCG
TCAGGATGCTATTACACTACCGTAAACACGGTTGAAGGATGGTGGAGTGCACTGCATGTTGCCAGTCTGTCAGTTAGTGG
AGATGTAACGGGCGAAATGGCTTACAACAAGCAGAGCAATCAATGGACACTGCCGGTAAATCTGGCAACACAATCTACCC
TGACCATTTCCGTATCAGGAAAGGGTAGCCTGTACAACCGGGAAACAACCGATATAGGACCTGCTATTGAGCAAACTGTC
GCATTTGGCGGCAATTCACAAAACCTCTTGTTCGGTGAGAGTGCAGATAATATTTCTGTAACTATGCCCGCCGGAGAAAA
TCTCCTGGTTCTTGATTTATCCAATCCTCTTCAATTTACCATCGGCATCGGAGAAGACGTTCCGCAGCCGGAAGTCTCTC
AGTATCTGTACTTCTCCGGCATAACCAATTGGGAAGGTTTTGACGATTACCTCACTTTATACGATGAAGCCGGACTTTGC
TATGGTGGTGCACATTGGATAGATTCTGAATGGGGATATCGTGCATATACTGAACAAGCATGGGAGCCCGCCTATAATGC
AGCCGATGGCTCTACCGACTTGTCCGGCACATTGATCCTTGCAGAGTCTAAAGACAACATTCCCGCACCGGCACAAGGGC
TGTATGTTATGGATTTCAACATGAAGTCATTGACCTATGAACTGACTCAAGTGCAGACTGTGACATTTACCGGACTTAAC
GATAATTGGTCTGAATCCCCCATGACACAGTCTGCAGAAAATCCAGAGATATTTACAGCCGAGTTCATTAAAGAAAAGAA
AAGTCCTTGGGGAGTAAAAGTGCTGATAAATAACAACTGGAACCTTTTCTTCGGCGGTGGTTCCGGCATTCTGCACCTGA
AGCATTCTGAATCCTCAGCAGGATTTGACGGAGACGATGAACTCGAAATAGGCAAAACCTATGTCCTTACCGTTGATTTG
GGACACCAAACTTATTCTTACTCACTTAAATAA

Upstream 100 bases:

>100_bases
GCCGTGCCGTGAACAAAAAATATAATATTTATCCCATTCCTGATACAGATCTTACAGCCAATCCTAATCTACATAATCCA
CTCTATTAAAAAGATACGAT

Downstream 100 bases:

>100_bases
ATCAGTTTCAATGAAAATAGCAAGCATATTATCAATAGTAGCACTCATTGCTTCAATGGCTACAAACGGGTGTAGTGAAG
ATGGCCCGGTTACAAATCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 570

Protein sequence:

>570_residues
MKVFSTIVKLILLSAVMTVATTSCDSDIDPVYVLSGDSMELMGGPNEVILTPDNPQALALTVYWSGDGRLALSDTLLQAP
VNVAEITIQFSKDEHFTAPLNIAVDKNIHSRQFLCEELNSLLDRLGYEANEKAPLWIRMRSALAANIAPEYSNVMEVLVQ
SYRIELVLAQVLDKDWKNTSMTLASPAEDGIYKGFMGVNGWENWWLREANNVMWGNLGEEGKTFYASSEDSHWNFWFPNP
SGCYYTTVNTVEGWWSALHVASLSVSGDVTGEMAYNKQSNQWTLPVNLATQSTLTISVSGKGSLYNRETTDIGPAIEQTV
AFGGNSQNLLFGESADNISVTMPAGENLLVLDLSNPLQFTIGIGEDVPQPEVSQYLYFSGITNWEGFDDYLTLYDEAGLC
YGGAHWIDSEWGYRAYTEQAWEPAYNAADGSTDLSGTLILAESKDNIPAPAQGLYVMDFNMKSLTYELTQVQTVTFTGLN
DNWSESPMTQSAENPEIFTAEFIKEKKSPWGVKVLINNNWNLFFGGGSGILHLKHSESSAGFDGDDELEIGKTYVLTVDL
GHQTYSYSLK

Sequences:

>Translated_570_residues
MKVFSTIVKLILLSAVMTVATTSCDSDIDPVYVLSGDSMELMGGPNEVILTPDNPQALALTVYWSGDGRLALSDTLLQAP
VNVAEITIQFSKDEHFTAPLNIAVDKNIHSRQFLCEELNSLLDRLGYEANEKAPLWIRMRSALAANIAPEYSNVMEVLVQ
SYRIELVLAQVLDKDWKNTSMTLASPAEDGIYKGFMGVNGWENWWLREANNVMWGNLGEEGKTFYASSEDSHWNFWFPNP
SGCYYTTVNTVEGWWSALHVASLSVSGDVTGEMAYNKQSNQWTLPVNLATQSTLTISVSGKGSLYNRETTDIGPAIEQTV
AFGGNSQNLLFGESADNISVTMPAGENLLVLDLSNPLQFTIGIGEDVPQPEVSQYLYFSGITNWEGFDDYLTLYDEAGLC
YGGAHWIDSEWGYRAYTEQAWEPAYNAADGSTDLSGTLILAESKDNIPAPAQGLYVMDFNMKSLTYELTQVQTVTFTGLN
DNWSESPMTQSAENPEIFTAEFIKEKKSPWGVKVLINNNWNLFFGGGSGILHLKHSESSAGFDGDDELEIGKTYVLTVDL
GHQTYSYSLK
>Mature_570_residues
MKVFSTIVKLILLSAVMTVATTSCDSDIDPVYVLSGDSMELMGGPNEVILTPDNPQALALTVYWSGDGRLALSDTLLQAP
VNVAEITIQFSKDEHFTAPLNIAVDKNIHSRQFLCEELNSLLDRLGYEANEKAPLWIRMRSALAANIAPEYSNVMEVLVQ
SYRIELVLAQVLDKDWKNTSMTLASPAEDGIYKGFMGVNGWENWWLREANNVMWGNLGEEGKTFYASSEDSHWNFWFPNP
SGCYYTTVNTVEGWWSALHVASLSVSGDVTGEMAYNKQSNQWTLPVNLATQSTLTISVSGKGSLYNRETTDIGPAIEQTV
AFGGNSQNLLFGESADNISVTMPAGENLLVLDLSNPLQFTIGIGEDVPQPEVSQYLYFSGITNWEGFDDYLTLYDEAGLC
YGGAHWIDSEWGYRAYTEQAWEPAYNAADGSTDLSGTLILAESKDNIPAPAQGLYVMDFNMKSLTYELTQVQTVTFTGLN
DNWSESPMTQSAENPEIFTAEFIKEKKSPWGVKVLINNNWNLFFGGGSGILHLKHSESSAGFDGDDELEIGKTYVLTVDL
GHQTYSYSLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62991; Mature: 62991

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVFSTIVKLILLSAVMTVATTSCDSDIDPVYVLSGDSMELMGGPNEVILTPDNPQALAL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCCCCEEEE
TVYWSGDGRLALSDTLLQAPVNVAEITIQFSKDEHFTAPLNIAVDKNIHSRQFLCEELNS
EEEECCCCCEEEECHHHHCCCCEEEEEEEECCCCCEECCEEEEEECCCCHHHHHHHHHHH
LLDRLGYEANEKAPLWIRMRSALAANIAPEYSNVMEVLVQSYRIELVLAQVLDKDWKNTS
HHHHHCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
MTLASPAEDGIYKGFMGVNGWENWWLREANNVMWGNLGEEGKTFYASSEDSHWNFWFPNP
EEEECCCCCCCEEEECCCCCCCCCEEECCCCEEECCCCCCCCEEEECCCCCCEEEECCCC
SGCYYTTVNTVEGWWSALHVASLSVSGDVTGEMAYNKQSNQWTLPVNLATQSTLTISVSG
CCCEEEEECCHHHHHHHHEEEEEEECCCEEEEEEECCCCCEEEEEEEEECCEEEEEEECC
KGSLYNRETTDIGPAIEQTVAFGGNSQNLLFGESADNISVTMPAGENLLVLDLSNPLQFT
CCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCEEEE
IGIGEDVPQPEVSQYLYFSGITNWEGFDDYLTLYDEAGLCYGGAHWIDSEWGYRAYTEQA
EECCCCCCCCHHHHEEEEECCCCCCCCCCCEEEECCCCEEECCCEEECCCCCCCHHHHHH
WEPAYNAADGSTDLSGTLILAESKDNIPAPAQGLYVMDFNMKSLTYELTQVQTVTFTGLN
CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCHHEEEEEEEEEEEEEECCC
DNWSESPMTQSAENPEIFTAEFIKEKKSPWGVKVLINNNWNLFFGGGSGILHLKHSESSA
CCCCCCCCCCCCCCCCEEEHHHHHHCCCCCEEEEEEECCCEEEEECCCEEEEEEECCCCC
GFDGDDELEIGKTYVLTVDLGHQTYSYSLK
CCCCCCCEEECCEEEEEEEECCCEEEEECC
>Mature Secondary Structure
MKVFSTIVKLILLSAVMTVATTSCDSDIDPVYVLSGDSMELMGGPNEVILTPDNPQALAL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCCCCEEEE
TVYWSGDGRLALSDTLLQAPVNVAEITIQFSKDEHFTAPLNIAVDKNIHSRQFLCEELNS
EEEECCCCCEEEECHHHHCCCCEEEEEEEECCCCCEECCEEEEEECCCCHHHHHHHHHHH
LLDRLGYEANEKAPLWIRMRSALAANIAPEYSNVMEVLVQSYRIELVLAQVLDKDWKNTS
HHHHHCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
MTLASPAEDGIYKGFMGVNGWENWWLREANNVMWGNLGEEGKTFYASSEDSHWNFWFPNP
EEEECCCCCCCEEEECCCCCCCCCEEECCCCEEECCCCCCCCEEEECCCCCCEEEECCCC
SGCYYTTVNTVEGWWSALHVASLSVSGDVTGEMAYNKQSNQWTLPVNLATQSTLTISVSG
CCCEEEEECCHHHHHHHHEEEEEEECCCEEEEEEECCCCCEEEEEEEEECCEEEEEEECC
KGSLYNRETTDIGPAIEQTVAFGGNSQNLLFGESADNISVTMPAGENLLVLDLSNPLQFT
CCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCEEEE
IGIGEDVPQPEVSQYLYFSGITNWEGFDDYLTLYDEAGLCYGGAHWIDSEWGYRAYTEQA
EECCCCCCCCHHHHEEEEECCCCCCCCCCCEEEECCCCEEECCCEEECCCCCCCHHHHHH
WEPAYNAADGSTDLSGTLILAESKDNIPAPAQGLYVMDFNMKSLTYELTQVQTVTFTGLN
CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCHHEEEEEEEEEEEEEECCC
DNWSESPMTQSAENPEIFTAEFIKEKKSPWGVKVLINNNWNLFFGGGSGILHLKHSESSA
CCCCCCCCCCCCCCCCEEEHHHHHHCCCCCEEEEEEECCCEEEEECCCEEEEEEECCCCC
GFDGDDELEIGKTYVLTVDLGHQTYSYSLK
CCCCCCCEEECCEEEEEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA