| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29350060
Identifier: 29350060
GI number: 29350060
Start: 6085860
End: 6088478
Strand: Reverse
Name: 29350060
Synonym: BT_4652
Alternate gene names: NA
Gene position: 6088478-6085860 (Counterclockwise)
Preceding gene: 29350061
Following gene: 29350059
Centisome position: 97.25
GC content: 46.32
Gene sequence:
>2619_bases ATGAAACAACGATATTATATTTTCCTGTTATTTGTAGCTATGCTTTCCTATAGTGGATATGCGCAGAAAAGCATCCTGCG TCTGAGTCAGCAGACGCTGATGCATGAAGTCCGCGAAACACCTTCTCCACTGGGCGGTCAGCACATAGCAGTCAATCCGC CGCGTTTCATGTGGCCGGATAAGTTCCCCCACCTCGGACCTGTGCTTGACGGAGTGGAAGAAGAAGATCACAAACCGGAA GTGACATACCGCATCCGTATCGCACGTGATCCTGAGTTTAAATCGGAAGTAATGACCGCCGAAAGAAACTGGGCTTTCTT CAATCCTTTCAAACTCTTTGAAAAAGGGAAATGGTATTGGCAGCACGCCTACCTTGATAAGGACGGCAAAGAAGAATGGT CGCCCGTCTATCATTTCTATGTGGACGAGCAGACACGTACGTTCAATCCTCCCTCCTTGCAAGAAGTGCTGGCGAAGTTC TCTCAAAGCCATCCCCGTATCCTGCTCGATGCCAAAGACTGGGATCAGATCATCGAGCGGAACAAGAATAATCCGGAAGC GCAGCTCTATATTCAGAAAGCAAGGAAATGCCTCAATCATCCATTGAAACATCTGGAGGAGGAAATCGATACCACCCAAG TAGTCAAATTGACGAACATCGTACAATATCGCTCGGCATTGATTCGGGAAAGCCGCAAGATAGTAGACCGCGAAGAAGCG AACATAGAAGCTATGGTACGCGCTTATCTGCTGACGAAAGACGAAGTGTACTACAAAGAAGGTATCAAACGTCTTTCCGA AATTCTTTCGTGGAAAGACAGTAAGTACTTCGCAGGAGATTTCAACCGCTCCACGATTCTGTCCATGAGTACTTCCGCTT ATGATGCATGGTACAATCTGTTAACGCCTGCCGAGAAACAGTTGCTTCTCGAAACGATCAGCGAAAACGCCCATAAGTTT TATCATGAATATGTGAATCATCTGGAAAACCGTATTGCCGACAATCATGTATGGCAGATGACTTTCCGTATTCTGAATAT GGCAGCTTTTGCTACATACGGTGAATTGCCGATGGCTTCCACTTGGGTAGATTATTGCTATAACGAATGGGTATCCCGTC TGCCGGGACTCAACACCGACGGAGGATGGCACAACGGTGACTCTTATTTCCATGTCAACCTTCGTACATTGATCGAAGTT CCCGCTTTCTATTCACGTATCAGCGGTTTCGATTTCTTTGCCGATCCCTGGTATAACAACAATGCGCTCTATGTAATCTA TCATCAGCCTCCGTTCTCCAAATCTGCGGGACACGGCAACTCCCATGAAACGAAAATGAAACCGAACGGGACACGGGTCG GCTATGCGGATGCTTTAGCACGTGAATGCAATAATCCGTGGGCAGCCGCCTACGCACGTACCATTCTGGAGAAAGAACCG GATATCATGAAAAAGTCTTTTCTTGGAAAAGCAGGTGATCTGACCTGGTATCGCTGCATTACTGACAAGGCACTCCCGAA AGAAGAACACTCATTGGCAGAGTTGCCGATGACGAAAGTATTTAATGAAACGGGAATTGCTACGATGCATACTTCGTTGG GGGATATAGAAAAGAACACAATGTTGTCATTCCGTTCCAGTCCATACGGTTCAACTTCGCACGCATTGGCCAATCAGAAT GCATTTAATACCTTCTATGGAGGCAAGGCGATCTTCTATAGCAGCGGACATCGTACCGGTTTTACCGATGACCATTGTAT GTATTCCTATCGAAACACCCGTGCGCACAATAGTATTCTGGTCAACGGAATGACTCAGACTATAGGAACGGAAGGTTACG GATGGATTCCCCGTTGGTATGAAGGAGAAAAGATTTCGTATATGGTGGGAGACGCTTCCAATGCTTACGGAAAGATCACA GCTCCTATCTGGTTGAAACGTGGTGAACTTTCCGGCACGCAGTACACTCCCGAAAAGGGATGGGATGAGAACAAACTGAA GATGTTCCGTCGGCACATCATTCAATTAGGCAATACGGGAGTGTATGTGATTTATGATGAACTGGAAGGAAAAGAAGCGG TCACATGGAGCTATCTGCTGCATACGGTAGAACTTCCGATGGAAATGCAGGAACTTCCTGATGAAGTGAAAGTTACGGGA AAGAATAAGGATGGAGGCATCTCTGTTGCTCATCTTTTCAGTTCGGCAAAGACGGAACAGGCCATCGTAGATACCTTCTT CTGCGCTCCAACCAACTGGAAGAATGTAACCAATGCCCAAGGAAAAGCTGTGAAGTATCCCAATCACTGGCATTTTTCGT CTACTACCATTCCATGTAAAACTGCCCGTTTCCTCACCGTTATGGATACACATGGAAATAACCGTGCGGATATGAAAGTG GTTCGCCAAGGCAATACCGTACAAGTAGGCGACTGGATTATTACCTGCAATCTGACGGAGAAAGGGAAAGCGGCAATCAG CGTCACCCATCAAGCGGAAAAGGTTTCTTTGAAATACGATGCCGGCAAGAAGGAAGGTGCGACTATCATCACAGATCAAG TACAAGGGAAACAGGTCAATAAGGTTCTGACTGACTATTTACCGGATTTTGAGATATAA
Upstream 100 bases:
>100_bases CTGCTCTTTGTGGGATATATCACCTTCATCGGTTTCTGGGCACATCCGCTGATCAACAACAAGACAATCAGTCTGAAAGA ACTCTTAAAAAAATAAGATG
Downstream 100 bases:
>100_bases TTTCTCAATTCTGGCACACAATATGGAGCTATTCAATGGTTATTATAAACTTACGAATAGCTCCTTTCTTTTATTGTCTT TTATTGAAGGTGACAATGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 872; Mature: 872
Protein sequence:
>872_residues MKQRYYIFLLFVAMLSYSGYAQKSILRLSQQTLMHEVRETPSPLGGQHIAVNPPRFMWPDKFPHLGPVLDGVEEEDHKPE VTYRIRIARDPEFKSEVMTAERNWAFFNPFKLFEKGKWYWQHAYLDKDGKEEWSPVYHFYVDEQTRTFNPPSLQEVLAKF SQSHPRILLDAKDWDQIIERNKNNPEAQLYIQKARKCLNHPLKHLEEEIDTTQVVKLTNIVQYRSALIRESRKIVDREEA NIEAMVRAYLLTKDEVYYKEGIKRLSEILSWKDSKYFAGDFNRSTILSMSTSAYDAWYNLLTPAEKQLLLETISENAHKF YHEYVNHLENRIADNHVWQMTFRILNMAAFATYGELPMASTWVDYCYNEWVSRLPGLNTDGGWHNGDSYFHVNLRTLIEV PAFYSRISGFDFFADPWYNNNALYVIYHQPPFSKSAGHGNSHETKMKPNGTRVGYADALARECNNPWAAAYARTILEKEP DIMKKSFLGKAGDLTWYRCITDKALPKEEHSLAELPMTKVFNETGIATMHTSLGDIEKNTMLSFRSSPYGSTSHALANQN AFNTFYGGKAIFYSSGHRTGFTDDHCMYSYRNTRAHNSILVNGMTQTIGTEGYGWIPRWYEGEKISYMVGDASNAYGKIT APIWLKRGELSGTQYTPEKGWDENKLKMFRRHIIQLGNTGVYVIYDELEGKEAVTWSYLLHTVELPMEMQELPDEVKVTG KNKDGGISVAHLFSSAKTEQAIVDTFFCAPTNWKNVTNAQGKAVKYPNHWHFSSTTIPCKTARFLTVMDTHGNNRADMKV VRQGNTVQVGDWIITCNLTEKGKAAISVTHQAEKVSLKYDAGKKEGATIITDQVQGKQVNKVLTDYLPDFEI
Sequences:
>Translated_872_residues MKQRYYIFLLFVAMLSYSGYAQKSILRLSQQTLMHEVRETPSPLGGQHIAVNPPRFMWPDKFPHLGPVLDGVEEEDHKPE VTYRIRIARDPEFKSEVMTAERNWAFFNPFKLFEKGKWYWQHAYLDKDGKEEWSPVYHFYVDEQTRTFNPPSLQEVLAKF SQSHPRILLDAKDWDQIIERNKNNPEAQLYIQKARKCLNHPLKHLEEEIDTTQVVKLTNIVQYRSALIRESRKIVDREEA NIEAMVRAYLLTKDEVYYKEGIKRLSEILSWKDSKYFAGDFNRSTILSMSTSAYDAWYNLLTPAEKQLLLETISENAHKF YHEYVNHLENRIADNHVWQMTFRILNMAAFATYGELPMASTWVDYCYNEWVSRLPGLNTDGGWHNGDSYFHVNLRTLIEV PAFYSRISGFDFFADPWYNNNALYVIYHQPPFSKSAGHGNSHETKMKPNGTRVGYADALARECNNPWAAAYARTILEKEP DIMKKSFLGKAGDLTWYRCITDKALPKEEHSLAELPMTKVFNETGIATMHTSLGDIEKNTMLSFRSSPYGSTSHALANQN AFNTFYGGKAIFYSSGHRTGFTDDHCMYSYRNTRAHNSILVNGMTQTIGTEGYGWIPRWYEGEKISYMVGDASNAYGKIT APIWLKRGELSGTQYTPEKGWDENKLKMFRRHIIQLGNTGVYVIYDELEGKEAVTWSYLLHTVELPMEMQELPDEVKVTG KNKDGGISVAHLFSSAKTEQAIVDTFFCAPTNWKNVTNAQGKAVKYPNHWHFSSTTIPCKTARFLTVMDTHGNNRADMKV VRQGNTVQVGDWIITCNLTEKGKAAISVTHQAEKVSLKYDAGKKEGATIITDQVQGKQVNKVLTDYLPDFEI >Mature_872_residues MKQRYYIFLLFVAMLSYSGYAQKSILRLSQQTLMHEVRETPSPLGGQHIAVNPPRFMWPDKFPHLGPVLDGVEEEDHKPE VTYRIRIARDPEFKSEVMTAERNWAFFNPFKLFEKGKWYWQHAYLDKDGKEEWSPVYHFYVDEQTRTFNPPSLQEVLAKF SQSHPRILLDAKDWDQIIERNKNNPEAQLYIQKARKCLNHPLKHLEEEIDTTQVVKLTNIVQYRSALIRESRKIVDREEA NIEAMVRAYLLTKDEVYYKEGIKRLSEILSWKDSKYFAGDFNRSTILSMSTSAYDAWYNLLTPAEKQLLLETISENAHKF YHEYVNHLENRIADNHVWQMTFRILNMAAFATYGELPMASTWVDYCYNEWVSRLPGLNTDGGWHNGDSYFHVNLRTLIEV PAFYSRISGFDFFADPWYNNNALYVIYHQPPFSKSAGHGNSHETKMKPNGTRVGYADALARECNNPWAAAYARTILEKEP DIMKKSFLGKAGDLTWYRCITDKALPKEEHSLAELPMTKVFNETGIATMHTSLGDIEKNTMLSFRSSPYGSTSHALANQN AFNTFYGGKAIFYSSGHRTGFTDDHCMYSYRNTRAHNSILVNGMTQTIGTEGYGWIPRWYEGEKISYMVGDASNAYGKIT APIWLKRGELSGTQYTPEKGWDENKLKMFRRHIIQLGNTGVYVIYDELEGKEAVTWSYLLHTVELPMEMQELPDEVKVTG KNKDGGISVAHLFSSAKTEQAIVDTFFCAPTNWKNVTNAQGKAVKYPNHWHFSSTTIPCKTARFLTVMDTHGNNRADMKV VRQGNTVQVGDWIITCNLTEKGKAAISVTHQAEKVSLKYDAGKKEGATIITDQVQGKQVNKVLTDYLPDFEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100306; Mature: 100306
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQRYYIFLLFVAMLSYSGYAQKSILRLSQQTLMHEVRETPSPLGGQHIAVNPPRFMWPD CCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC KFPHLGPVLDGVEEEDHKPEVTYRIRIARDPEFKSEVMTAERNWAFFNPFKLFEKGKWYW CCCCCCHHHCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCEEECHHHHHHCCCEEE QHAYLDKDGKEEWSPVYHFYVDEQTRTFNPPSLQEVLAKFSQSHPRILLDAKDWDQIIER EEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHC NKNNPEAQLYIQKARKCLNHPLKHLEEEIDTTQVVKLTNIVQYRSALIRESRKIVDREEA CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC NIEAMVRAYLLTKDEVYYKEGIKRLSEILSWKDSKYFAGDFNRSTILSMSTSAYDAWYNL CHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCHHHHHHHHH LTPAEKQLLLETISENAHKFYHEYVNHLENRIADNHVWQMTFRILNMAAFATYGELPMAS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHH TWVDYCYNEWVSRLPGLNTDGGWHNGDSYFHVNLRTLIEVPAFYSRISGFDFFADPWYNN HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCEECC NALYVIYHQPPFSKSAGHGNSHETKMKPNGTRVGYADALARECNNPWAAAYARTILEKEP CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCH DIMKKSFLGKAGDLTWYRCITDKALPKEEHSLAELPMTKVFNETGIATMHTSLGDIEKNT HHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHHHCCCCCEEEECCCCCCCCCC MLSFRSSPYGSTSHALANQNAFNTFYGGKAIFYSSGHRTGFTDDHCMYSYRNTRAHNSIL EEEECCCCCCCCHHHHCCCCCCCEECCCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEE VNGMTQTIGTEGYGWIPRWYEGEKISYMVGDASNAYGKITAPIWLKRGELSGTQYTPEKG EECCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCEEEECCCCCCCCCCCCCC WDENKLKMFRRHIIQLGNTGVYVIYDELEGKEAVTWSYLLHTVELPMEMQELPDEVKVTG CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCHHHHHCCCCEEEEC KNKDGGISVAHLFSSAKTEQAIVDTFFCAPTNWKNVTNAQGKAVKYPNHWHFSSTTIPCK CCCCCCEEHHHHHHHCCHHHHHHHHEEECCCCCCCCCCCCCCEEECCCCEECCCCCCCCC TARFLTVMDTHGNNRADMKVVRQGNTVQVGDWIITCNLTEKGKAAISVTHQAEKVSLKYD CEEEEEEEECCCCCCCCEEEEECCCEEEECCEEEEEECCCCCCEEEEEEECCEEEEEEEC AGKKEGATIITDQVQGKQVNKVLTDYLPDFEI CCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure MKQRYYIFLLFVAMLSYSGYAQKSILRLSQQTLMHEVRETPSPLGGQHIAVNPPRFMWPD CCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC KFPHLGPVLDGVEEEDHKPEVTYRIRIARDPEFKSEVMTAERNWAFFNPFKLFEKGKWYW CCCCCCHHHCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCEEECHHHHHHCCCEEE QHAYLDKDGKEEWSPVYHFYVDEQTRTFNPPSLQEVLAKFSQSHPRILLDAKDWDQIIER EEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHC NKNNPEAQLYIQKARKCLNHPLKHLEEEIDTTQVVKLTNIVQYRSALIRESRKIVDREEA CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC NIEAMVRAYLLTKDEVYYKEGIKRLSEILSWKDSKYFAGDFNRSTILSMSTSAYDAWYNL CHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCHHHHHHHHH LTPAEKQLLLETISENAHKFYHEYVNHLENRIADNHVWQMTFRILNMAAFATYGELPMAS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHH TWVDYCYNEWVSRLPGLNTDGGWHNGDSYFHVNLRTLIEVPAFYSRISGFDFFADPWYNN HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCEECC NALYVIYHQPPFSKSAGHGNSHETKMKPNGTRVGYADALARECNNPWAAAYARTILEKEP CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCH DIMKKSFLGKAGDLTWYRCITDKALPKEEHSLAELPMTKVFNETGIATMHTSLGDIEKNT HHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHHHCCCCCEEEECCCCCCCCCC MLSFRSSPYGSTSHALANQNAFNTFYGGKAIFYSSGHRTGFTDDHCMYSYRNTRAHNSIL EEEECCCCCCCCHHHHCCCCCCCEECCCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEE VNGMTQTIGTEGYGWIPRWYEGEKISYMVGDASNAYGKITAPIWLKRGELSGTQYTPEKG EECCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCEEEECCCCCCCCCCCCCC WDENKLKMFRRHIIQLGNTGVYVIYDELEGKEAVTWSYLLHTVELPMEMQELPDEVKVTG CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCHHHHHCCCCEEEEC KNKDGGISVAHLFSSAKTEQAIVDTFFCAPTNWKNVTNAQGKAVKYPNHWHFSSTTIPCK CCCCCCEEHHHHHHHCCHHHHHHHHEEECCCCCCCCCCCCCCEEECCCCEECCCCCCCCC TARFLTVMDTHGNNRADMKVVRQGNTVQVGDWIITCNLTEKGKAAISVTHQAEKVSLKYD CEEEEEEEECCCCCCCCEEEEECCCEEEECCEEEEEECCCCCCEEEEEEECCEEEEEEEC AGKKEGATIITDQVQGKQVNKVLTDYLPDFEI CCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA