| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349976
Identifier: 29349976
GI number: 29349976
Start: 5988314
End: 5990749
Strand: Reverse
Name: 29349976
Synonym: BT_4568
Alternate gene names: NA
Gene position: 5990749-5988314 (Counterclockwise)
Preceding gene: 29349977
Following gene: 29349975
Centisome position: 95.69
GC content: 39.04
Gene sequence:
>2436_bases ATGATGAAGACTCTTAAAATCTATTTCCTGCTTATGCTGCTGATTCAGACAATCAGCATATCCGCACAGTCAGTCATATC GGGTAAAATAACCAATAACGACAGTTCACCCATAGTCGGCGCGACAATATTGTTATCAAACGGTATGGACTCTACCTATA TAACAGGGACGACCTCCGACTTGGACGGACGATTTAAAATGATAAATGTCAAATCGGGCAATTACTTTCTTTCCTTGTCA ATGATCGGATATAAGAAAGCAAATATCCCCCTGCAGATCAAGGAAAGCATGAATCTGGAATTGGGTGACATTACACTGGA AGAAGATTCTTATATATTGTCTACTGTAAATATAATCGGCAAGCGCCCTCCAATCAAGGCCGAACCGGGAAAGATGACAG TCAACTTATCATCTGCCCTATTGAGTACGGACGGTAATATACTGGATGCACTGAGAAAACTACCGGGAGTAATCGTTCAG AATGACGGAACAATTATTCTTAATGGCAAATCAGGGGCGAATGTTTTAATGGATGATAAAGTGACCTATTTATCGGGAGA GAACCTCATCAATTACCTGCGCTCCATCCCTGCCAGTTCTATTGAAAATATAGAACTGATATCCCAGCCATCATCAAAAC ACGATGCTTCAGGCAGTTCGGGCATCATTAACATTCAAAAAAAGAAAATCAAAGAACAAGGTATAAGCCTTACAGCTTCC TCCGGTCTGGAACAAGGAAAACATACTAAAGGGAATGAAAACCTGACTCTGAACTTTCACCACAATAAATTGAATATGTA TGCCGACTATTCTTATTATTGGGGAAAAGATTTTATAGAACTATCGGTTTCCGGTCATTACCTGGATCCGATGACTTTAA AACCTCTTGAACTGAGAAAAGATTTTGATAGTGATATAAACCGGCAATACAAAGGGCATTATATCAAAACAGGGGTCGAT TATGACTTGTCGGAGAAGATAGCCATCGGAACATACTTCTCATCAAGCTGGCTCAATAGGAACAAACAAGAAGTGACTGT ATCTGACTTTTTTAATAACGACAAGACTCAAAGCGACTCAACCTTAACAGCGTTAAGCACACCGGACTATAGCTACACCA ATATCATAGGGGGAGCGAACATGATATACAAATTTGCGAAAACAGGAAAATGGGATGCTTCTTTTGATTATCAGCTTTTT AATCAAGAGGATAACCATCTGCTGAAATCCTTTTTTCAGACAGGTATTCATCCGGTAAAAGGAGACACATTGTCCGGTAT AACCAATGGGGACATTAAAATATACAGCGGACAAACTAATTTGAGCTATGATATCTCTGACAAGTTCGGAATAACCACCG GGCTCAAATCGGTTTTCGTACATATAAGCAGTGATGCCTTATACAAAAACCTGATTGCCGGTGATTGGAGAGAAGACAGT GATCTCAGCAGTAGTTTTGCTTATCATGAGAATATCTACGCAGGGTATCTTCAGCTAAACGCTAAATGGTCTGCCAGATT TTCAACAGAAATAGGCTTACGATTAGAAAGTACATATACAAAAAGCAATTATAATTCAGCCGTTCAGGACTCGGTATTCA ACCAAAGCTATGTACACCTCTTCCCTACTTTGATGGTTCAATATCAGCTTTCCGAAAATCATAATTTGTCTATGGCATAC AGCCGTCGCATCGTCCGCCCCAATTACAGAAATATGAATCCTTTCGTTGAGGTCAGAGACCAGTTTTTATATGAACAAGG AAATACCGAATTAAGACCAGAACTAATAGATAATATAGAAATCTCATGGCTACTCAAAAAACGATATTCATTCAATGTAT TCTACTCTCACAGGAGTGATCCTATCTCGTTAAGTTTTTTAGTCGAAGATAATAACCGTGTCTTACTAATGCCGCAAAAT TTATCAGGCAATAACTCATTCGGAGTAAGAGCCGGCTTGAATAACCTAAAACCATTCCAATGGTGGACATCCCATATAAA CGGATCTTTAACTTATAAGAAATTCAGTTGGGCAACACTTGGGAAAACACTAAAAAATGAAGTGACAACACCCATGCTAC ATATCAGCAATCAATTTACATTACCATACGGCTGGGATGCGGAAGCCCTCGGATTTTATAGTGGAGAAATGATTGAAGGA CAGACCAGAGTGAAACCTTTATGGACAATATCTCTCGGAGTCCGCAAAAACCTGTGCAATAACAAATTTAGTTTGTATAT TTACGCACATGATATATTTCATTCGAACCGCCCCCATGTAAGTATGGAGACTAACTATCTGTATTACGCGTCTCAGGAAA AAAACGACAGCAGAATGATAGGCATATCGCTCAGTTATCGTTTCAATCGAGGCAAAGAGATTAAGAAATCTCAGAATGAA AACAGAATAGAAGAAAGTAAACGGATAGGTTTGTAG
Upstream 100 bases:
>100_bases TTTTCGTTTCATCAAGTAAATCATTCCATTCATCAGATTAATTTGAGTACGCGAAACCATCAGGGTAATTTTGAGGTCAG AAATCAATTAAACTATTTAA
Downstream 100 bases:
>100_bases TATCAAAGATTAAAATAGCAACTAATGAACTTAAAGTACGAATGGATTAACACCCTATTTATAATACTGCCACTTTCCTT GTGCGTATTTATTATTGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Receptor Plug; Nb-Dependent Receptor; NB Dependent Receptor; NB-Dependent Receptor Domain-Containing Protein; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Exported Protein; NB-Dependent Receptor Plug Domain-Containing Protein; Nb-Dependent Outer Membrane Receptor; NB-Dependent Receptor Plug Domain Protein; Outer Membrane Receptor Protein Mostly Fe Transport; Outer Membrane Receptor Family Transporter; Protein Containing nB-Dependent Receptor Plug Domain
Number of amino acids: Translated: 811; Mature: 811
Protein sequence:
>811_residues MMKTLKIYFLLMLLIQTISISAQSVISGKITNNDSSPIVGATILLSNGMDSTYITGTTSDLDGRFKMINVKSGNYFLSLS MIGYKKANIPLQIKESMNLELGDITLEEDSYILSTVNIIGKRPPIKAEPGKMTVNLSSALLSTDGNILDALRKLPGVIVQ NDGTIILNGKSGANVLMDDKVTYLSGENLINYLRSIPASSIENIELISQPSSKHDASGSSGIINIQKKKIKEQGISLTAS SGLEQGKHTKGNENLTLNFHHNKLNMYADYSYYWGKDFIELSVSGHYLDPMTLKPLELRKDFDSDINRQYKGHYIKTGVD YDLSEKIAIGTYFSSSWLNRNKQEVTVSDFFNNDKTQSDSTLTALSTPDYSYTNIIGGANMIYKFAKTGKWDASFDYQLF NQEDNHLLKSFFQTGIHPVKGDTLSGITNGDIKIYSGQTNLSYDISDKFGITTGLKSVFVHISSDALYKNLIAGDWREDS DLSSSFAYHENIYAGYLQLNAKWSARFSTEIGLRLESTYTKSNYNSAVQDSVFNQSYVHLFPTLMVQYQLSENHNLSMAY SRRIVRPNYRNMNPFVEVRDQFLYEQGNTELRPELIDNIEISWLLKKRYSFNVFYSHRSDPISLSFLVEDNNRVLLMPQN LSGNNSFGVRAGLNNLKPFQWWTSHINGSLTYKKFSWATLGKTLKNEVTTPMLHISNQFTLPYGWDAEALGFYSGEMIEG QTRVKPLWTISLGVRKNLCNNKFSLYIYAHDIFHSNRPHVSMETNYLYYASQEKNDSRMIGISLSYRFNRGKEIKKSQNE NRIEESKRIGL
Sequences:
>Translated_811_residues MMKTLKIYFLLMLLIQTISISAQSVISGKITNNDSSPIVGATILLSNGMDSTYITGTTSDLDGRFKMINVKSGNYFLSLS MIGYKKANIPLQIKESMNLELGDITLEEDSYILSTVNIIGKRPPIKAEPGKMTVNLSSALLSTDGNILDALRKLPGVIVQ NDGTIILNGKSGANVLMDDKVTYLSGENLINYLRSIPASSIENIELISQPSSKHDASGSSGIINIQKKKIKEQGISLTAS SGLEQGKHTKGNENLTLNFHHNKLNMYADYSYYWGKDFIELSVSGHYLDPMTLKPLELRKDFDSDINRQYKGHYIKTGVD YDLSEKIAIGTYFSSSWLNRNKQEVTVSDFFNNDKTQSDSTLTALSTPDYSYTNIIGGANMIYKFAKTGKWDASFDYQLF NQEDNHLLKSFFQTGIHPVKGDTLSGITNGDIKIYSGQTNLSYDISDKFGITTGLKSVFVHISSDALYKNLIAGDWREDS DLSSSFAYHENIYAGYLQLNAKWSARFSTEIGLRLESTYTKSNYNSAVQDSVFNQSYVHLFPTLMVQYQLSENHNLSMAY SRRIVRPNYRNMNPFVEVRDQFLYEQGNTELRPELIDNIEISWLLKKRYSFNVFYSHRSDPISLSFLVEDNNRVLLMPQN LSGNNSFGVRAGLNNLKPFQWWTSHINGSLTYKKFSWATLGKTLKNEVTTPMLHISNQFTLPYGWDAEALGFYSGEMIEG QTRVKPLWTISLGVRKNLCNNKFSLYIYAHDIFHSNRPHVSMETNYLYYASQEKNDSRMIGISLSYRFNRGKEIKKSQNE NRIEESKRIGL >Mature_811_residues MMKTLKIYFLLMLLIQTISISAQSVISGKITNNDSSPIVGATILLSNGMDSTYITGTTSDLDGRFKMINVKSGNYFLSLS MIGYKKANIPLQIKESMNLELGDITLEEDSYILSTVNIIGKRPPIKAEPGKMTVNLSSALLSTDGNILDALRKLPGVIVQ NDGTIILNGKSGANVLMDDKVTYLSGENLINYLRSIPASSIENIELISQPSSKHDASGSSGIINIQKKKIKEQGISLTAS SGLEQGKHTKGNENLTLNFHHNKLNMYADYSYYWGKDFIELSVSGHYLDPMTLKPLELRKDFDSDINRQYKGHYIKTGVD YDLSEKIAIGTYFSSSWLNRNKQEVTVSDFFNNDKTQSDSTLTALSTPDYSYTNIIGGANMIYKFAKTGKWDASFDYQLF NQEDNHLLKSFFQTGIHPVKGDTLSGITNGDIKIYSGQTNLSYDISDKFGITTGLKSVFVHISSDALYKNLIAGDWREDS DLSSSFAYHENIYAGYLQLNAKWSARFSTEIGLRLESTYTKSNYNSAVQDSVFNQSYVHLFPTLMVQYQLSENHNLSMAY SRRIVRPNYRNMNPFVEVRDQFLYEQGNTELRPELIDNIEISWLLKKRYSFNVFYSHRSDPISLSFLVEDNNRVLLMPQN LSGNNSFGVRAGLNNLKPFQWWTSHINGSLTYKKFSWATLGKTLKNEVTTPMLHISNQFTLPYGWDAEALGFYSGEMIEG QTRVKPLWTISLGVRKNLCNNKFSLYIYAHDIFHSNRPHVSMETNYLYYASQEKNDSRMIGISLSYRFNRGKEIKKSQNE NRIEESKRIGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91853; Mature: 91853
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKTLKIYFLLMLLIQTISISAQSVISGKITNNDSSPIVGATILLSNGMDSTYITGTTSD CCCHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCEEEEEEEEECCCCCEEEEECCCC LDGRFKMINVKSGNYFLSLSMIGYKKANIPLQIKESMNLELGDITLEEDSYILSTVNIIG CCCEEEEEEEECCCEEEEEEEEEEEECCCCEEECCCCCEEEEEEEECCCCEEEEEEHHHC KRPPIKAEPGKMTVNLSSALLSTDGNILDALRKLPGVIVQNDGTIILNGKSGANVLMDDK CCCCCCCCCCEEEEEECHHEECCCCHHHHHHHHCCCEEEECCCEEEEECCCCCCEEEECC VTYLSGENLINYLRSIPASSIENIELISQPSSKHDASGSSGIINIQKKKIKEQGISLTAS EEEECCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEEHHHHHHHCCCEEEEC SGLEQGKHTKGNENLTLNFHHNKLNMYADYSYYWGKDFIELSVSGHYLDPMTLKPLELRK CCCCCCCCCCCCCEEEEEEECCEEEEEEECEEECCCEEEEEEECCEEECCCCCCHHHHHH DFDSDINRQYKGHYIKTGVDYDLSEKIAIGTYFSSSWLNRNKQEVTVSDFFNNDKTQSDS HCCHHHCCCCCCEEEEECCCCCCCCCEEEEEEECHHHHCCCCCEEEEEHHCCCCCCCCCC TLTALSTPDYSYTNIIGGANMIYKFAKTGKWDASFDYQLFNQEDNHLLKSFFQTGIHPVK EEEEECCCCCCHHEECCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCC GDTLSGITNGDIKIYSGQTNLSYDISDKFGITTGLKSVFVHISSDALYKNLIAGDWREDS CCCCCCCCCCCEEEEECCCCEEEECCCCCCCHHCCEEEEEEECCCHHHHHHHCCCCCCCC DLSSSFAYHENIYAGYLQLNAKWSARFSTEIGLRLESTYTKSNYNSAVQDSVFNQSYVHL CCCCCCEECCCEEEEEEEEEEEECEEEEEEECEEEEEEECCCCCCCHHHHHHCCCHHHHE FPTLMVQYQLSENHNLSMAYSRRIVRPNYRNMNPFVEVRDQFLYEQGNTELRPELIDNIE EEEEEEEEEECCCCCEEEHHHCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCE ISWLLKKRYSFNVFYSHRSDPISLSFLVEDNNRVLLMPQNLSGNNSFGVRAGLNNLKPFQ EEEEEEECEEEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCHH WWTSHINGSLTYKKFSWATLGKTLKNEVTTPMLHISNQFTLPYGWDAEALGFYSGEMIEG HHHHHCCCEEEEEEEEHHHHHHHHHHHCCCCEEEECCEEECCCCCCCHHCEEECCCEECC QTRVKPLWTISLGVRKNLCNNKFSLYIYAHDIFHSNRPHVSMETNYLYYASQEKNDSRMI CCCCCEEEEEEECHHHHHCCCCEEEEEEEEEHHCCCCCEEEEECCEEEEEECCCCCCEEE GISLSYRFNRGKEIKKSQNENRIEESKRIGL EEEEEEEECCCCHHHHCCCHHHHHHHHCCCC >Mature Secondary Structure MMKTLKIYFLLMLLIQTISISAQSVISGKITNNDSSPIVGATILLSNGMDSTYITGTTSD CCCHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCEEEEEEEEECCCCCEEEEECCCC LDGRFKMINVKSGNYFLSLSMIGYKKANIPLQIKESMNLELGDITLEEDSYILSTVNIIG CCCEEEEEEEECCCEEEEEEEEEEEECCCCEEECCCCCEEEEEEEECCCCEEEEEEHHHC KRPPIKAEPGKMTVNLSSALLSTDGNILDALRKLPGVIVQNDGTIILNGKSGANVLMDDK CCCCCCCCCCEEEEEECHHEECCCCHHHHHHHHCCCEEEECCCEEEEECCCCCCEEEECC VTYLSGENLINYLRSIPASSIENIELISQPSSKHDASGSSGIINIQKKKIKEQGISLTAS EEEECCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEEHHHHHHHCCCEEEEC SGLEQGKHTKGNENLTLNFHHNKLNMYADYSYYWGKDFIELSVSGHYLDPMTLKPLELRK CCCCCCCCCCCCCEEEEEEECCEEEEEEECEEECCCEEEEEEECCEEECCCCCCHHHHHH DFDSDINRQYKGHYIKTGVDYDLSEKIAIGTYFSSSWLNRNKQEVTVSDFFNNDKTQSDS HCCHHHCCCCCCEEEEECCCCCCCCCEEEEEEECHHHHCCCCCEEEEEHHCCCCCCCCCC TLTALSTPDYSYTNIIGGANMIYKFAKTGKWDASFDYQLFNQEDNHLLKSFFQTGIHPVK EEEEECCCCCCHHEECCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCC GDTLSGITNGDIKIYSGQTNLSYDISDKFGITTGLKSVFVHISSDALYKNLIAGDWREDS CCCCCCCCCCCEEEEECCCCEEEECCCCCCCHHCCEEEEEEECCCHHHHHHHCCCCCCCC DLSSSFAYHENIYAGYLQLNAKWSARFSTEIGLRLESTYTKSNYNSAVQDSVFNQSYVHL CCCCCCEECCCEEEEEEEEEEEECEEEEEEECEEEEEEECCCCCCCHHHHHHCCCHHHHE FPTLMVQYQLSENHNLSMAYSRRIVRPNYRNMNPFVEVRDQFLYEQGNTELRPELIDNIE EEEEEEEEEECCCCCEEEHHHCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCE ISWLLKKRYSFNVFYSHRSDPISLSFLVEDNNRVLLMPQNLSGNNSFGVRAGLNNLKPFQ EEEEEEECEEEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCHH WWTSHINGSLTYKKFSWATLGKTLKNEVTTPMLHISNQFTLPYGWDAEALGFYSGEMIEG HHHHHCCCEEEEEEEEHHHHHHHHHHHCCCCEEEECCEEECCCCCCCHHCEEECCCEECC QTRVKPLWTISLGVRKNLCNNKFSLYIYAHDIFHSNRPHVSMETNYLYYASQEKNDSRMI CCCCCEEEEEEECHHHHHCCCCEEEEEEEEEHHCCCCCEEEEECCEEEEEECCCCCCEEE GISLSYRFNRGKEIKKSQNENRIEESKRIGL EEEEEEEECCCCHHHHCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA