Definition Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome.
Accession NC_004663
Length 6,260,361

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The map label for this gene is yocR [H]

Identifier: 29349050

GI number: 29349050

Start: 4719009

End: 4720379

Strand: Reverse

Name: yocR [H]

Synonym: BT_3642

Alternate gene names: 29349050

Gene position: 4720379-4719009 (Counterclockwise)

Preceding gene: 29349052

Following gene: 29349049

Centisome position: 75.4

GC content: 46.97

Gene sequence:

>1371_bases
ATGACGAAAATTGATAGAGCGAACTTCGGAAGTAAATTAGGCGTAATACTTGCTTCCGCCGGCTCGGCAGTAGGATTGGG
AAACATCTGGAGATTTCCCTATGAAACGGGTAATCACGGTGGCGCAGCCTTTATACTGATCTATTTAGGATGCGTTTTCC
TTTTGGGACTTCCCATTTTGATTGCCGAATTCCTAATCGGACGCCGTTCGAGGGCAAATACAGCGGGAGCCTATCAGAAA
TTAGCTCCCGGCACTCATTGGCGCTGGGTGGGACGCATGGGAGTCCTCGCAGCTTTTCTGATTCTCAGTTATTATTCCGT
AGTGGCAGGATGGACGCTGGAGTATGTGTATGAAGCTCTTACGAACGGCTTTACGGGTAAGACTCCCACAGAATTCATCT
CTTCCTTCCAGCAGTTCTCCAGCAGTCCGTGGCGACCGGTCTTGTGGTTGGTTCTGTTTCTGTTGGTTACTCATTTTATT
ATTGTCAAAGGCGTGGAGAAAGGTATCGAGAAATCTTCCAAGATCATGATGCCGACTCTGTTCATTATTATATTGATACT
TGTAATCTGTTCGGTTACCCTGCCGGGAGCTGGTGCGGGTATCGAGTTTCTGCTGAAACCGGATTTCAGCAAGGTGGACG
GAAATGTATTTCTGAGTGCGATGGGACAGGCTTTCTTCTCCCTTAGCCTGGGGATGGGATGTCTCTGCACCTACGCTTCT
TATTTCAGCAAAGAAACCAATCTGACCAAGACAGCATTCAGCGTAGGGATTATAGATACATTTGTGGCAGTATTGGCAGG
CTTCATTATCTTTCCGGCCGCATTTTCTGTAGGCATACAACCGGATGCGGGTCCGAGCCTTATCTTTATCACACTGCCCA
ATGTATTCCAGCAGGCATTCAGCGGAGTACCGATATTGGCCTATATCTTCTCCGTCATGTTCTACGTATTGCTTGCCATG
GCAGCACTGACTTCCACCATTTCCCTGCACGAAGTGGTCACCGCTTATCTGCACGAAGAATTCAACTTCACACGCGGCAA
GGCAGCCAGACTGGTGACCGGAGGATGTATCTTCTTAGGTATCCTTTGTTCTTTGTCGCTCGGAGTGATGAAAGGATTCA
CCATCTTCGGATTGGGAATCTTTGACTTATTCGACTTTGTCACGGCTAAGATCATGCTGACACTCGGCGGTCTGTGCATT
TCCATCTTTACCGGATGGTATCTCGACAAGAAAATCGTCTGGTCGGAGATCACCAATGACGGTTCGCTGAAAGTTCCCGT
ATACAAACTGATCATCTTTATATTAAGATATATTGCACCGATTGCCATCTCTCTGATCTTTATCAATGAGTTGGGACTTA
TCAAACTATAA

Upstream 100 bases:

>100_bases
TAAATAAAATTACGATTCCGGTACAAATATAACTATCATTTTCTATATTTGCATTTTAATACGTACATTTTATAACGATT
TGTAAGACAAAACAAGATTT

Downstream 100 bases:

>100_bases
TGTGGAAAGACTTTTTTTATTTTACTAAAACCGAACGACAAGGCATTATCGTCCTTGTCGTTCTTGTTATAGGGGTATAC
ACAATCCCCGCACTCTTGCA

Product: Na+-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MTKIDRANFGSKLGVILASAGSAVGLGNIWRFPYETGNHGGAAFILIYLGCVFLLGLPILIAEFLIGRRSRANTAGAYQK
LAPGTHWRWVGRMGVLAAFLILSYYSVVAGWTLEYVYEALTNGFTGKTPTEFISSFQQFSSSPWRPVLWLVLFLLVTHFI
IVKGVEKGIEKSSKIMMPTLFIIILILVICSVTLPGAGAGIEFLLKPDFSKVDGNVFLSAMGQAFFSLSLGMGCLCTYAS
YFSKETNLTKTAFSVGIIDTFVAVLAGFIIFPAAFSVGIQPDAGPSLIFITLPNVFQQAFSGVPILAYIFSVMFYVLLAM
AALTSTISLHEVVTAYLHEEFNFTRGKAARLVTGGCIFLGILCSLSLGVMKGFTIFGLGIFDLFDFVTAKIMLTLGGLCI
SIFTGWYLDKKIVWSEITNDGSLKVPVYKLIIFILRYIAPIAISLIFINELGLIKL

Sequences:

>Translated_456_residues
MTKIDRANFGSKLGVILASAGSAVGLGNIWRFPYETGNHGGAAFILIYLGCVFLLGLPILIAEFLIGRRSRANTAGAYQK
LAPGTHWRWVGRMGVLAAFLILSYYSVVAGWTLEYVYEALTNGFTGKTPTEFISSFQQFSSSPWRPVLWLVLFLLVTHFI
IVKGVEKGIEKSSKIMMPTLFIIILILVICSVTLPGAGAGIEFLLKPDFSKVDGNVFLSAMGQAFFSLSLGMGCLCTYAS
YFSKETNLTKTAFSVGIIDTFVAVLAGFIIFPAAFSVGIQPDAGPSLIFITLPNVFQQAFSGVPILAYIFSVMFYVLLAM
AALTSTISLHEVVTAYLHEEFNFTRGKAARLVTGGCIFLGILCSLSLGVMKGFTIFGLGIFDLFDFVTAKIMLTLGGLCI
SIFTGWYLDKKIVWSEITNDGSLKVPVYKLIIFILRYIAPIAISLIFINELGLIKL
>Mature_455_residues
TKIDRANFGSKLGVILASAGSAVGLGNIWRFPYETGNHGGAAFILIYLGCVFLLGLPILIAEFLIGRRSRANTAGAYQKL
APGTHWRWVGRMGVLAAFLILSYYSVVAGWTLEYVYEALTNGFTGKTPTEFISSFQQFSSSPWRPVLWLVLFLLVTHFII
VKGVEKGIEKSSKIMMPTLFIIILILVICSVTLPGAGAGIEFLLKPDFSKVDGNVFLSAMGQAFFSLSLGMGCLCTYASY
FSKETNLTKTAFSVGIIDTFVAVLAGFIIFPAAFSVGIQPDAGPSLIFITLPNVFQQAFSGVPILAYIFSVMFYVLLAMA
ALTSTISLHEVVTAYLHEEFNFTRGKAARLVTGGCIFLGILCSLSLGVMKGFTIFGLGIFDLFDFVTAKIMLTLGGLCIS
IFTGWYLDKKIVWSEITNDGSLKVPVYKLIIFILRYIAPIAISLIFINELGLIKL

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507043, Length=418, Percent_Identity=28.9473684210526, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI188528618, Length=430, Percent_Identity=27.2093023255814, Blast_Score=136, Evalue=5e-32,
Organism=Homo sapiens, GI21361581, Length=441, Percent_Identity=26.984126984127, Blast_Score=135, Evalue=6e-32,
Organism=Homo sapiens, GI171184408, Length=440, Percent_Identity=25.9090909090909, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI171184406, Length=440, Percent_Identity=25.9090909090909, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI171184404, Length=440, Percent_Identity=25.9090909090909, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI51468073, Length=297, Percent_Identity=28.6195286195286, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI289191351, Length=454, Percent_Identity=26.431718061674, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI4557046, Length=454, Percent_Identity=26.431718061674, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI289191377, Length=454, Percent_Identity=26.431718061674, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI134304856, Length=410, Percent_Identity=28.2926829268293, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI194018524, Length=298, Percent_Identity=30.2013422818792, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI4507041, Length=455, Percent_Identity=26.3736263736264, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI7657587, Length=445, Percent_Identity=27.8651685393258, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI197276623, Length=438, Percent_Identity=25.5707762557078, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI54607094, Length=438, Percent_Identity=25.5707762557078, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI11181770, Length=297, Percent_Identity=29.6296296296296, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI58219014, Length=300, Percent_Identity=29, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI92859670, Length=435, Percent_Identity=27.3563218390805, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI33354281, Length=296, Percent_Identity=28.0405405405405, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI67782317, Length=374, Percent_Identity=27.0053475935829, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI67782313, Length=362, Percent_Identity=27.0718232044199, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI67782315, Length=362, Percent_Identity=27.0718232044199, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI12408638, Length=293, Percent_Identity=27.9863481228669, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI5032097, Length=445, Percent_Identity=25.8426966292135, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI218563756, Length=438, Percent_Identity=25.5707762557078, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI300360519, Length=270, Percent_Identity=28.1481481481481, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI21361693, Length=209, Percent_Identity=28.2296650717703, Blast_Score=82, Evalue=2e-15,
Organism=Homo sapiens, GI289191353, Length=347, Percent_Identity=25.9365994236311, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI55749589, Length=284, Percent_Identity=26.056338028169, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI6005715, Length=175, Percent_Identity=32.5714285714286, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI197276625, Length=121, Percent_Identity=32.2314049586777, Blast_Score=69, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17554804, Length=487, Percent_Identity=28.1314168377823, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17555248, Length=416, Percent_Identity=27.6442307692308, Blast_Score=127, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI25146584, Length=408, Percent_Identity=26.9607843137255, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI133952791, Length=256, Percent_Identity=32.421875, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71995588, Length=397, Percent_Identity=26.448362720403, Blast_Score=98, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17542050, Length=122, Percent_Identity=37.7049180327869, Blast_Score=85, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71998244, Length=375, Percent_Identity=27.4666666666667, Blast_Score=85, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17535731, Length=106, Percent_Identity=43.3962264150943, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI212642127, Length=293, Percent_Identity=25.938566552901, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17569475, Length=416, Percent_Identity=22.8365384615385, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17136952, Length=450, Percent_Identity=25.5555555555556, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI281364394, Length=450, Percent_Identity=25.5555555555556, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI28574704, Length=450, Percent_Identity=25.5555555555556, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI17136950, Length=450, Percent_Identity=25.5555555555556, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI28574702, Length=450, Percent_Identity=25.5555555555556, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI281365034, Length=416, Percent_Identity=27.6442307692308, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI45550877, Length=447, Percent_Identity=25.9507829977629, Blast_Score=128, Evalue=8e-30,
Organism=Drosophila melanogaster, GI24661428, Length=384, Percent_Identity=28.125, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24762620, Length=399, Percent_Identity=27.0676691729323, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI45551183, Length=427, Percent_Identity=25.7611241217799, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI19921352, Length=422, Percent_Identity=26.0663507109005, Blast_Score=120, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24584353, Length=422, Percent_Identity=26.0663507109005, Blast_Score=120, Evalue=3e-27,
Organism=Drosophila melanogaster, GI19921936, Length=496, Percent_Identity=26.4112903225806, Blast_Score=119, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24582567, Length=453, Percent_Identity=26.4900662251656, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24655079, Length=300, Percent_Identity=28.3333333333333, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI45551088, Length=485, Percent_Identity=26.3917525773196, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24652942, Length=485, Percent_Identity=26.3917525773196, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24639516, Length=297, Percent_Identity=28.2828282828283, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24639514, Length=297, Percent_Identity=28.2828282828283, Blast_Score=111, Evalue=9e-25,
Organism=Drosophila melanogaster, GI221329674, Length=297, Percent_Identity=28.2828282828283, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI281363702, Length=484, Percent_Identity=24.7933884297521, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24639853, Length=424, Percent_Identity=25.4716981132075, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI281364136, Length=414, Percent_Identity=24.3961352657005, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI281363700, Length=340, Percent_Identity=26.7647058823529, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24654186, Length=241, Percent_Identity=29.8755186721992, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24582569, Length=412, Percent_Identity=24.7572815533981, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 49675; Mature: 49544

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure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CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TKIDRANFGSKLGVILASAGSAVGLGNIWRFPYETGNHGGAAFILIYLGCVFLLGLPIL
CCCCCCCCCCHHHHHEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH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CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]