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The map label for this gene is dapB [H]

Identifier: 29348729

GI number: 29348729

Start: 4263582

End: 4264346

Strand: Reverse

Name: dapB [H]

Synonym: BT_3320

Alternate gene names: 29348729

Gene position: 4264346-4263582 (Counterclockwise)

Preceding gene: 29348731

Following gene: 29348728

Centisome position: 68.12

GC content: 47.84

Gene sequence:

>765_bases
ATGAAAATAGCGTTGATCGGTTATGGAAAAATGGGCAAGGAACTTGAAAAGGCAGCCCTTAGTCGCGGACACGAAATTGT
CTGCATTATTGATGTTGATAATCAGGAAGACTTTGAGTCGGAAGCATTCAAGTCCGCCGACGTAGCCATTGAGTTCACCA
ATCCGATGGTAGCCTACAGCAATTATATGAAAGCTTTCAAAGCCGGAGTCAAATTAGTATCAGGCAGTACAGGATGGATG
GCGGAACATGGCGAAGAAATCAAAAAGCTATGTACCGAAGGAGGAAAAACCCTTTTCTGGTCGTCCAACTTCAGTCTTGG
AGTAGCCATCTTCTCGTCTGTCAACAAGTATCTGGCAAAAATAATGAATCAATTCCCCGGTTATGACGTCACCATGAGCG
AGACTCATCATATCCATAAACTGGATGCACCCAGCGGCACTGCCATCACACTGGCTGAAGGCATACTGGAAAACATGGAC
CGCAAAGACAAATGGGTAAAAGGAACGCTCCTTGCACCGGACGGTACCGTCAGCGGCACCGACGCCTGCGCTTCCAACGA
GTTTCCTATCGACTCGATCCGTGAAGGAGAGGTTTTCGGCATCCATACCATCCGCTACGAGTCAGAAGTAGACAGCATTT
CCATCACGCACGATGCCAAGAATCGCGGCGGCTTTGTATTGGGAGCCATCCTTGCTGCCGAATACACGGCCCAACATGAG
GGATATCTGGGCATGAGTGATTTATTCCCATTCTTAAACGAATAA

Upstream 100 bases:

>100_bases
TGGAGAAGGTGTTCCATGTTAACAGAAAGTTAATGTGCACTGCAAATGTAATAAAAATCTTATCTTTGCGACTATTATTT
TGAATATAAGTCAGAAAACA

Downstream 100 bases:

>100_bases
GGCTTCAAAGCCACTATCAAACGAATATAGATTATGAGACAAGCCACACGCACACAATGGATCAAATGCACCATTGCTAT
TCTCCTTTATCTCGCCTTCC

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKIALIGYGKMGKELEKAALSRGHEIVCIIDVDNQEDFESEAFKSADVAIEFTNPMVAYSNYMKAFKAGVKLVSGSTGWM
AEHGEEIKKLCTEGGKTLFWSSNFSLGVAIFSSVNKYLAKIMNQFPGYDVTMSETHHIHKLDAPSGTAITLAEGILENMD
RKDKWVKGTLLAPDGTVSGTDACASNEFPIDSIREGEVFGIHTIRYESEVDSISITHDAKNRGGFVLGAILAAEYTAQHE
GYLGMSDLFPFLNE

Sequences:

>Translated_254_residues
MKIALIGYGKMGKELEKAALSRGHEIVCIIDVDNQEDFESEAFKSADVAIEFTNPMVAYSNYMKAFKAGVKLVSGSTGWM
AEHGEEIKKLCTEGGKTLFWSSNFSLGVAIFSSVNKYLAKIMNQFPGYDVTMSETHHIHKLDAPSGTAITLAEGILENMD
RKDKWVKGTLLAPDGTVSGTDACASNEFPIDSIREGEVFGIHTIRYESEVDSISITHDAKNRGGFVLGAILAAEYTAQHE
GYLGMSDLFPFLNE
>Mature_254_residues
MKIALIGYGKMGKELEKAALSRGHEIVCIIDVDNQEDFESEAFKSADVAIEFTNPMVAYSNYMKAFKAGVKLVSGSTGWM
AEHGEEIKKLCTEGGKTLFWSSNFSLGVAIFSSVNKYLAKIMNQFPGYDVTMSETHHIHKLDAPSGTAITLAEGILENMD
RKDKWVKGTLLAPDGTVSGTDACASNEFPIDSIREGEVFGIHTIRYESEVDSISITHDAKNRGGFVLGAILAAEYTAQHE
GYLGMSDLFPFLNE

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=280, Percent_Identity=26.4285714285714, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 27767; Mature: 27767

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIALIGYGKMGKELEKAALSRGHEIVCIIDVDNQEDFESEAFKSADVAIEFTNPMVAYS
CEEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHCCCCEEEEECCCHHHHH
NYMKAFKAGVKLVSGSTGWMAEHGEEIKKLCTEGGKTLFWSSNFSLGVAIFSSVNKYLAK
HHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
IMNQFPGYDVTMSETHHIHKLDAPSGTAITLAEGILENMDRKDKWVKGTLLAPDGTVSGT
HHHHCCCCCEEECCCCCEEEECCCCCCEEHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
DACASNEFPIDSIREGEVFGIHTIRYESEVDSISITHDAKNRGGFVLGAILAAEYTAQHE
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEHHHHHHHHHHHCCC
GYLGMSDLFPFLNE
CCCCHHHHHHHHCC
>Mature Secondary Structure
MKIALIGYGKMGKELEKAALSRGHEIVCIIDVDNQEDFESEAFKSADVAIEFTNPMVAYS
CEEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHCCCCEEEEECCCHHHHH
NYMKAFKAGVKLVSGSTGWMAEHGEEIKKLCTEGGKTLFWSSNFSLGVAIFSSVNKYLAK
HHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
IMNQFPGYDVTMSETHHIHKLDAPSGTAITLAEGILENMDRKDKWVKGTLLAPDGTVSGT
HHHHCCCCCEEECCCCCEEEECCCCCCEEHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
DACASNEFPIDSIREGEVFGIHTIRYESEVDSISITHDAKNRGGFVLGAILAAEYTAQHE
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEHHHHHHHHHHHCCC
GYLGMSDLFPFLNE
CCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA