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The map label for this gene is 29348692

Identifier: 29348692

GI number: 29348692

Start: 4200181

End: 4200594

Strand: Reverse

Name: 29348692

Synonym: BT_3283

Alternate gene names: NA

Gene position: 4200594-4200181 (Counterclockwise)

Preceding gene: 29348693

Following gene: 29348677

Centisome position: 67.1

GC content: 43.96

Gene sequence:

>414_bases
ATGGCTGTAACTTATCAAACCGAAGGCGTCAAGATGCCTGATATCAAAAAACGGGAAACTACAGAATGGATAAAGAATGT
AGCTGCCTCTTATGGAAAAAGACTCGGTGAAATCGCTTATATCTTCTGCTCCGATGAAAAGATTCTGGAGGTAAACCGAC
AATATCTGCAACACGATTATTACACGGATATCATTACCTTTGATTATTGCCAGGGTGATCGTCTGTCGGGCGACCTGTTT
ATCAGTCTGGATACGATACGCACCAATGCCGAACAATTCGGGGCAGCTTATGATGATGAACTACACCGGGTTATTATTCA
CGGTATTCTTCATCTCTGCGGTATCAATGACAAAGGTCCCGGGGAAAGGGAAATTATGGAAGAGGCGGAGAATAAGGCGT
TGGCAATGCGATAG

Upstream 100 bases:

>100_bases
CCGGAATGCAGTCACCTGCGGCTTGATTGCAGACTTCTCCGGTATTATAGCCGCCATCTTAATCAGTTATTTATTTTTCT
TTTAAATCATAGACTCAATT

Downstream 100 bases:

>100_bases
TTGGCGATGCAATAAAAAGCCATTGACCGGATAAAATTAGCACCCCGCCACAATCACTGCGACGAGGTGCCCCCAAGTAT
CTAAGAGAGATAGTTATTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MAVTYQTEGVKMPDIKKRETTEWIKNVAASYGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDYCQGDRLSGDLF
ISLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGPGEREIMEEAENKALAMR

Sequences:

>Translated_137_residues
MAVTYQTEGVKMPDIKKRETTEWIKNVAASYGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDYCQGDRLSGDLF
ISLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGPGEREIMEEAENKALAMR
>Mature_136_residues
AVTYQTEGVKMPDIKKRETTEWIKNVAASYGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDYCQGDRLSGDLFI
SLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGPGEREIMEEAENKALAMR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BACTN (Q8A2M2)

Other databases:

- EMBL:   AE015928
- RefSeq:   NP_812195.1
- ProteinModelPortal:   Q8A2M2
- SMR:   Q8A2M2
- GeneID:   1071796
- GenomeReviews:   AE015928_GR
- KEGG:   bth:BT_3283
- NMPDR:   fig|226186.1.peg.3282
- HOGENOM:   HBG734136
- OMA:   VIIHGIL
- ProtClustDB:   CLSK913607
- BioCyc:   BTHE226186:BT_3283-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 15756; Mature: 15625

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTYQTEGVKMPDIKKRETTEWIKNVAASYGKRLGEIAYIFCSDEKILEVNRQYLQHDY
CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHH
YTDIITFDYCQGDRLSGDLFISLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGP
HHHEEEEECCCCCCCCCEEEEEEEHHHCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
GEREIMEEAENKALAMR
CHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AVTYQTEGVKMPDIKKRETTEWIKNVAASYGKRLGEIAYIFCSDEKILEVNRQYLQHDY
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHH
YTDIITFDYCQGDRLSGDLFISLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGP
HHHEEEEECCCCCCCCCEEEEEEEHHHCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
GEREIMEEAENKALAMR
CHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663928