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The map label for this gene is deoC [H]

Identifier: 29348672

GI number: 29348672

Start: 4167078

End: 4167980

Strand: Reverse

Name: deoC [H]

Synonym: BT_3263

Alternate gene names: 29348672

Gene position: 4167980-4167078 (Counterclockwise)

Preceding gene: 29348673

Following gene: 29348671

Centisome position: 66.58

GC content: 45.85

Gene sequence:

>903_bases
ATGGAAGAGAATAGCTCACAATCCAACAAGTATGATGCCGCATTGGCAAAGTATAACACCAATCTGAGCGATGCAGACAT
ACAGGCTCGGGTGGCTGACCTGATTGAAAAGAAAGTGCCGGAAAACAATACGGAAGAAGTCAAGAAACTCCTGTTCAACT
GCATCGACCTGACCACGCTGAACAGCACGGACAGCGATGAAAGCGTGATGCATTTCACCGAAAAAGTGAATGAGTTCGAC
AATGAATTCCCCGATATGAAGAACGTCGCTGCCATCTGCGTATACCCCAATTTCGCGGATATTGTAAAGAATACACTGCA
AGTAGATGGCATCAATATCGCTTGTGTTTCGGGCGGGTTCCCTTCTTCTCAGACTTTCATCGAAGTGAAAGTAGCGGAAA
CGGCACTGGCTATCGCTGACGGTGCGGACGAAATAGATATTGTTATCTCTATCGGTAAATTCCTGAGCGGTGACTACGAA
ACAATGTGCGAAGAAATTCAGGAATTAAAAGAAGTCTGCAAGGAACGCCACCTCAAGGTAATCCTCGAGACAGGTGCTTT
GAAAACCGCCTCCAACATCAAGAAAGCCTCTATCCTATCCATGTATTCGGGTGCAGATTTCATCAAGACATCGACCGGAA
AGCAACAGCCTGCCGCTACCCCGGAAGCCGCTTATGTGATGTGCGAAGCTATCAAGGAGTACTATCAAAAAACAAACAAC
AAGATCGGCTTCAAACCGGCAGGAGGCATCAACACCGTCCATGATGCAATCATTTATTACACTATTGTGAAAGAAATATT
AGGCGAAGAATGGCTGAACAACCGATTGTTCCGTCTGGGTACCAGTCGTTTGGCCAATTTGCTTCTCTCCGATATCAAGG
GCGAAGAGATCAAATTCTTCTAA

Upstream 100 bases:

>100_bases
CAGACAGGCGTAGACATCACCAAAGCCTTCAGGGAAAGCCTGGAAAAGAAAACGAAACGAGATAATAAAAGACATATCAA
TAACCCAAAACTGAACGATC

Downstream 100 bases:

>100_bases
GGAATTACATTAGCAATCAAGTATGCCGTACCGCGCTTCACCTTCCGTTCCTATGGAAGGAAGCGCGGTATTTTTTATAT
AATAAAAACTAAAGATACTT

Product: putative deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MEENSSQSNKYDAALAKYNTNLSDADIQARVADLIEKKVPENNTEEVKKLLFNCIDLTTLNSTDSDESVMHFTEKVNEFD
NEFPDMKNVAAICVYPNFADIVKNTLQVDGINIACVSGGFPSSQTFIEVKVAETALAIADGADEIDIVISIGKFLSGDYE
TMCEEIQELKEVCKERHLKVILETGALKTASNIKKASILSMYSGADFIKTSTGKQQPAATPEAAYVMCEAIKEYYQKTNN
KIGFKPAGGINTVHDAIIYYTIVKEILGEEWLNNRLFRLGTSRLANLLLSDIKGEEIKFF

Sequences:

>Translated_300_residues
MEENSSQSNKYDAALAKYNTNLSDADIQARVADLIEKKVPENNTEEVKKLLFNCIDLTTLNSTDSDESVMHFTEKVNEFD
NEFPDMKNVAAICVYPNFADIVKNTLQVDGINIACVSGGFPSSQTFIEVKVAETALAIADGADEIDIVISIGKFLSGDYE
TMCEEIQELKEVCKERHLKVILETGALKTASNIKKASILSMYSGADFIKTSTGKQQPAATPEAAYVMCEAIKEYYQKTNN
KIGFKPAGGINTVHDAIIYYTIVKEILGEEWLNNRLFRLGTSRLANLLLSDIKGEEIKFF
>Mature_300_residues
MEENSSQSNKYDAALAKYNTNLSDADIQARVADLIEKKVPENNTEEVKKLLFNCIDLTTLNSTDSDESVMHFTEKVNEFD
NEFPDMKNVAAICVYPNFADIVKNTLQVDGINIACVSGGFPSSQTFIEVKVAETALAIADGADEIDIVISIGKFLSGDYE
TMCEEIQELKEVCKERHLKVILETGALKTASNIKKASILSMYSGADFIKTSTGKQQPAATPEAAYVMCEAIKEYYQKTNN
KIGFKPAGGINTVHDAIIYYTIVKEILGEEWLNNRLFRLGTSRLANLLLSDIKGEEIKFF

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=254, Percent_Identity=43.7007874015748, Blast_Score=201, Evalue=7e-52,
Organism=Escherichia coli, GI1790841, Length=234, Percent_Identity=41.025641025641, Blast_Score=156, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17533015, Length=246, Percent_Identity=47.1544715447154, Blast_Score=214, Evalue=5e-56,
Organism=Drosophila melanogaster, GI19922098, Length=292, Percent_Identity=37.3287671232877, Blast_Score=171, Evalue=5e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 33261; Mature: 33261

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEENSSQSNKYDAALAKYNTNLSDADIQARVADLIEKKVPENNTEEVKKLLFNCIDLTTL
CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEC
NSTDSDESVMHFTEKVNEFDNEFPDMKNVAAICVYPNFADIVKNTLQVDGINIACVSGGF
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHEECCEEEEEEECCC
PSSQTFIEVKVAETALAIADGADEIDIVISIGKFLSGDYETMCEEIQELKEVCKERHLKV
CCCCCEEEEEEHHHHHHHHCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHEE
ILETGALKTASNIKKASILSMYSGADFIKTSTGKQQPAATPEAAYVMCEAIKEYYQKTNN
EEECCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
KIGFKPAGGINTVHDAIIYYTIVKEILGEEWLNNRLFRLGTSRLANLLLSDIKGEEIKFF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure
MEENSSQSNKYDAALAKYNTNLSDADIQARVADLIEKKVPENNTEEVKKLLFNCIDLTTL
CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEC
NSTDSDESVMHFTEKVNEFDNEFPDMKNVAAICVYPNFADIVKNTLQVDGINIACVSGGF
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHEECCEEEEEEECCC
PSSQTFIEVKVAETALAIADGADEIDIVISIGKFLSGDYETMCEEIQELKEVCKERHLKV
CCCCCEEEEEEHHHHHHHHCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHEE
ILETGALKTASNIKKASILSMYSGADFIKTSTGKQQPAATPEAAYVMCEAIKEYYQKTNN
EEECCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
KIGFKPAGGINTVHDAIIYYTIVKEILGEEWLNNRLFRLGTSRLANLLLSDIKGEEIKFF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA