| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348671
Identifier: 29348671
GI number: 29348671
Start: 4165991
End: 4166671
Strand: Reverse
Name: 29348671
Synonym: BT_3262
Alternate gene names: NA
Gene position: 4166671-4165991 (Counterclockwise)
Preceding gene: 29348672
Following gene: 29348669
Centisome position: 66.56
GC content: 44.49
Gene sequence:
>681_bases ATGAAGTCACACACAAAGAACTTACGTTTTAACCATAACCCCTTAAATCTGATACTCGGCACCAGAAAGAAACAAGGTCT GCGCATCGGTTATATGGAGGCTGCACTGGATGGCTTCTATCTTAACTGTATGGAAACCGGAGTACACCCGGAAAAACTAA GTAAACTATTATCAGATAAGTTCCATTGCACAGATGCAATTTCTTCCTGCCAGCTATTCCTATTCCTCATCAACGAAGGC GACAGAGCCTCCTATTCTATTATGGTCCCCTATTTACTCTCTACCGAAAACCTAAACCAGTTTGAAAACACCATCCGCGA ACGCTTCTACGGAGTAGACCGATTCATTCAACAGGGCAGAAATCTATACAAATTCAAAGAGTATATAGAAGAAAGAGGAG AGCCGATTGTATGGATTAACGACTTAGAGAGAGGAGTGATCGGATGGGATATGGCACAAGTTGTCGGGCTGGCCCGGGCT GCCAAAGACTGCGGCTACATCACCAAAGAACAAGCATGGGAATACATCGAACAGGCGAGCACGTTATGTTCCGAAATCCT CCGCACACCGGAAGAAATAGACAAAAGTTTCCTCATCGGAGGAGCGATGAAATCGAATAAAATTGAAGATTGGGAGGAAT TAATCCTGTGTTACTCTCTGCTCAGGAACAGTGGGGAGTAG
Upstream 100 bases:
>100_bases GCTTTTATGTCATCATAACGGCTTGCCGAAGCCCCAGGAAAAGACATATAGCAGCAGTTCTCACGCTTTTTTTAGTTAAC CATAAGCGAAAAAGTATAAA
Downstream 100 bases:
>100_bases TTATTTCTCACGGGCGACCACGTAATCCAGATAAGTCCGCAGGGCAAGGCAAATATTTGAATCCGGCAAGGCAGCCAGCA AATCAAAGGCCTTCTTTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 226; Mature: 226
Protein sequence:
>226_residues MKSHTKNLRFNHNPLNLILGTRKKQGLRIGYMEAALDGFYLNCMETGVHPEKLSKLLSDKFHCTDAISSCQLFLFLINEG DRASYSIMVPYLLSTENLNQFENTIRERFYGVDRFIQQGRNLYKFKEYIEERGEPIVWINDLERGVIGWDMAQVVGLARA AKDCGYITKEQAWEYIEQASTLCSEILRTPEEIDKSFLIGGAMKSNKIEDWEELILCYSLLRNSGE
Sequences:
>Translated_226_residues MKSHTKNLRFNHNPLNLILGTRKKQGLRIGYMEAALDGFYLNCMETGVHPEKLSKLLSDKFHCTDAISSCQLFLFLINEG DRASYSIMVPYLLSTENLNQFENTIRERFYGVDRFIQQGRNLYKFKEYIEERGEPIVWINDLERGVIGWDMAQVVGLARA AKDCGYITKEQAWEYIEQASTLCSEILRTPEEIDKSFLIGGAMKSNKIEDWEELILCYSLLRNSGE >Mature_226_residues MKSHTKNLRFNHNPLNLILGTRKKQGLRIGYMEAALDGFYLNCMETGVHPEKLSKLLSDKFHCTDAISSCQLFLFLINEG DRASYSIMVPYLLSTENLNQFENTIRERFYGVDRFIQQGRNLYKFKEYIEERGEPIVWINDLERGVIGWDMAQVVGLARA AKDCGYITKEQAWEYIEQASTLCSEILRTPEEIDKSFLIGGAMKSNKIEDWEELILCYSLLRNSGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26128; Mature: 26128
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSHTKNLRFNHNPLNLILGTRKKQGLRIGYMEAALDGFYLNCMETGVHPEKLSKLLSDK CCCCCCCCEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC FHCTDAISSCQLFLFLINEGDRASYSIMVPYLLSTENLNQFENTIRERFYGVDRFIQQGR HHHHHHHHHHHEEEEEECCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC NLYKFKEYIEERGEPIVWINDLERGVIGWDMAQVVGLARAAKDCGYITKEQAWEYIEQAS HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH TLCSEILRTPEEIDKSFLIGGAMKSNKIEDWEELILCYSLLRNSGE HHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKSHTKNLRFNHNPLNLILGTRKKQGLRIGYMEAALDGFYLNCMETGVHPEKLSKLLSDK CCCCCCCCEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC FHCTDAISSCQLFLFLINEGDRASYSIMVPYLLSTENLNQFENTIRERFYGVDRFIQQGR HHHHHHHHHHHEEEEEECCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC NLYKFKEYIEERGEPIVWINDLERGVIGWDMAQVVGLARAAKDCGYITKEQAWEYIEQAS HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH TLCSEILRTPEEIDKSFLIGGAMKSNKIEDWEELILCYSLLRNSGE HHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA