| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348368
Identifier: 29348368
GI number: 29348368
Start: 3728218
End: 3729600
Strand: Reverse
Name: 29348368
Synonym: BT_2959
Alternate gene names: NA
Gene position: 3729600-3728218 (Counterclockwise)
Preceding gene: 29348370
Following gene: 29348367
Centisome position: 59.57
GC content: 45.41
Gene sequence:
>1383_bases ATGAAATACTGGATGTTATTGTTTGCCCTTTTGTGGGTATCTTACGGAACGGGCATGGCCCGGAAAACGGAAAAAGTAGT AAATAACGGAATTCCCTGGTTTGACGACAGGGGAGAGATAGTCAATGCCCACGGTGCCTGCATTGTGGAAGAGAATGGCA GATATTATCTTTTCGGGGAATATAAGTCGGACAAGAGCAATGCTTTTCCGGGTTTCAGTTGTTATTCATCTGATGATTTG GTGAACTGGAAGTTCGAACGTGTTGTACTGCCGATGCAGTCAAGCGGAATTCTTGGCCCTGATCGTGTAGGCGAGCGTGT GAAAGTCATGAAATGCCCTTCTACCGGCGAGTATGTGATGTATATGCATGCAGACGATATGAACTATAAAGATCCCCATA TCGGTTATGCTACCTGTAGCACTATAGCAGGTGAATATAAACTTCACGGACCTCTGTTGTATGAAGGTAAGCCTATTCGC CGCTGGGATATGGGGACTTATCAGGACACGGACGGTACCGGATATCTGCTGTTGCACGGAGGAATTGTCTATCGTTTGAG TAAGGACTACCGTACGGCAGAGGAAAAAGTGGTATCGGGAGTAGGTGGTTCTCACGGAGAGTCTCCGGCAATGTTTAAAA AGGACGGCACGTATTTCTTCTTGTTCTCCAATCTGACCAGTTGGGAGAAGAATGATAATTTCTACTTTACAGCCCCTTCC GTCAAAGGGCCGTGGACCAGACAAGGTTTGTTTGCTCCCGAAGGAAGCCTGACCTATAATTCACAGACCACTTTTGTGTT TCCTTTAAAGTGTGGTGAAGATACGATTCCTATGTTTATGGGCGATCGCTGGTCTTATCCGCATCAGGCTTCGGCTGCCA CCTATGTGTGGATGCCTATGCAGGTGGATGGAACAAAGCTTTCTATTCCGGAATACTGGCCTTCCTGGGACGTTGATAAG TTGAAACCCGTAAATCCTCTGCGCAAAGGAAAAACCGTCGATTTAAAGAAGATAACGTTCAGTAAAGAAGCTGACTGGAA AGTGGAGGAAGGAAGAATATCTTCCAATGTAAAAGGAAGTACGCTGAGCATTCCTTTCACTGGCTCTTGTGTGGCTGTTA TGGGCGAAACGAACTGTCATAGCGGATATGCGCGTATGAATATCCTTGATAAGAAAGGGGAGAAAATATATTCTTCACTG GTCGATTTCTATAGTAAGGCGAATGATCATGCAACGCGTTTTAAGACTCCCCAATTGGCTGAAGGGGAATATACGCTGGT GATTGAAGTTACGGGCATCAGCCCCACATGGACTGATAAAACGAAGAGAATCTATGGCAGCGACGATTGCTTTGTGACCA TTACTGATATTGTAAAACTGTAA
Upstream 100 bases:
>100_bases TGCTTGTTGTACTATTCTCCATAGGAATATAGATAGTTAATCGTAAATTTGTAATTTAATTGTGCCTTATACTTTTTATA AGCATTTATAGAAGAATATC
Downstream 100 bases:
>100_bases TATTTATGAGAAATAGAATTTTATTTTCTTTCCTTGCTTGGGTAGCAGTGATCGTGTCCGTTCAGGGTAAACAAAAAGAT TTTGTTTTGCAGTCCGGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: Beta-Xylosidase; Ricin B Lectin; Glycoside Hydrolase Family; Family; Glycosyl Hydrolase Family; Licheninase; Coagulation Factor 5/8 Type Domain Protein; Glycoside Hydrolase Family Beta-Glycosidase; Xylosidase/Arabinofuranosidase; Ricin-Type Beta-Trefoil Lectin Domain Protein; Beta-Galactosidase; Cna B Domain Protein
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MKYWMLLFALLWVSYGTGMARKTEKVVNNGIPWFDDRGEIVNAHGACIVEENGRYYLFGEYKSDKSNAFPGFSCYSSDDL VNWKFERVVLPMQSSGILGPDRVGERVKVMKCPSTGEYVMYMHADDMNYKDPHIGYATCSTIAGEYKLHGPLLYEGKPIR RWDMGTYQDTDGTGYLLLHGGIVYRLSKDYRTAEEKVVSGVGGSHGESPAMFKKDGTYFFLFSNLTSWEKNDNFYFTAPS VKGPWTRQGLFAPEGSLTYNSQTTFVFPLKCGEDTIPMFMGDRWSYPHQASAATYVWMPMQVDGTKLSIPEYWPSWDVDK LKPVNPLRKGKTVDLKKITFSKEADWKVEEGRISSNVKGSTLSIPFTGSCVAVMGETNCHSGYARMNILDKKGEKIYSSL VDFYSKANDHATRFKTPQLAEGEYTLVIEVTGISPTWTDKTKRIYGSDDCFVTITDIVKL
Sequences:
>Translated_460_residues MKYWMLLFALLWVSYGTGMARKTEKVVNNGIPWFDDRGEIVNAHGACIVEENGRYYLFGEYKSDKSNAFPGFSCYSSDDL VNWKFERVVLPMQSSGILGPDRVGERVKVMKCPSTGEYVMYMHADDMNYKDPHIGYATCSTIAGEYKLHGPLLYEGKPIR RWDMGTYQDTDGTGYLLLHGGIVYRLSKDYRTAEEKVVSGVGGSHGESPAMFKKDGTYFFLFSNLTSWEKNDNFYFTAPS VKGPWTRQGLFAPEGSLTYNSQTTFVFPLKCGEDTIPMFMGDRWSYPHQASAATYVWMPMQVDGTKLSIPEYWPSWDVDK LKPVNPLRKGKTVDLKKITFSKEADWKVEEGRISSNVKGSTLSIPFTGSCVAVMGETNCHSGYARMNILDKKGEKIYSSL VDFYSKANDHATRFKTPQLAEGEYTLVIEVTGISPTWTDKTKRIYGSDDCFVTITDIVKL >Mature_460_residues MKYWMLLFALLWVSYGTGMARKTEKVVNNGIPWFDDRGEIVNAHGACIVEENGRYYLFGEYKSDKSNAFPGFSCYSSDDL VNWKFERVVLPMQSSGILGPDRVGERVKVMKCPSTGEYVMYMHADDMNYKDPHIGYATCSTIAGEYKLHGPLLYEGKPIR RWDMGTYQDTDGTGYLLLHGGIVYRLSKDYRTAEEKVVSGVGGSHGESPAMFKKDGTYFFLFSNLTSWEKNDNFYFTAPS VKGPWTRQGLFAPEGSLTYNSQTTFVFPLKCGEDTIPMFMGDRWSYPHQASAATYVWMPMQVDGTKLSIPEYWPSWDVDK LKPVNPLRKGKTVDLKKITFSKEADWKVEEGRISSNVKGSTLSIPFTGSCVAVMGETNCHSGYARMNILDKKGEKIYSSL VDFYSKANDHATRFKTPQLAEGEYTLVIEVTGISPTWTDKTKRIYGSDDCFVTITDIVKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51989; Mature: 51989
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYWMLLFALLWVSYGTGMARKTEKVVNNGIPWFDDRGEIVNAHGACIVEENGRYYLFGE CHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEEECCCCEEEEEE YKSDKSNAFPGFSCYSSDDLVNWKFERVVLPMQSSGILGPDRVGERVKVMKCPSTGEYVM CCCCCCCCCCCEEECCCCCCEEEEEEEEEEEECCCCCCCHHHHCCEEEEEECCCCCCEEE YMHADDMNYKDPHIGYATCSTIAGEYKLHGPLLYEGKPIRRWDMGTYQDTDGTGYLLLHG EEEECCCCCCCCCCCEEEHHHCCCCEEECCCEEECCCCCEEECCCCEECCCCCEEEEEEC GIVYRLSKDYRTAEEKVVSGVGGSHGESPAMFKKDGTYFFLFSNLTSWEKNDNFYFTAPS CEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCEEEECCC VKGPWTRQGLFAPEGSLTYNSQTTFVFPLKCGEDTIPMFMGDRWSYPHQASAATYVWMPM CCCCCCCCCCCCCCCCEEECCCEEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEEE QVDGTKLSIPEYWPSWDVDKLKPVNPLRKGKTVDLKKITFSKEADWKVEEGRISSNVKGS EECCCEEECCCCCCCCCCCCCCCCCHHHCCCEEEEEEEEECCCCCCEEECCEECCCCCCC TLSIPFTGSCVAVMGETNCHSGYARMNILDKKGEKIYSSLVDFYSKANDHATRFKTPQLA EEEEEECCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCCCC EGEYTLVIEVTGISPTWTDKTKRIYGSDDCFVTITDIVKL CCCEEEEEEEECCCCCCCCCCCEEECCCCCEEEEEEECCC >Mature Secondary Structure MKYWMLLFALLWVSYGTGMARKTEKVVNNGIPWFDDRGEIVNAHGACIVEENGRYYLFGE CHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEEECCCCEEEEEE YKSDKSNAFPGFSCYSSDDLVNWKFERVVLPMQSSGILGPDRVGERVKVMKCPSTGEYVM CCCCCCCCCCCEEECCCCCCEEEEEEEEEEEECCCCCCCHHHHCCEEEEEECCCCCCEEE YMHADDMNYKDPHIGYATCSTIAGEYKLHGPLLYEGKPIRRWDMGTYQDTDGTGYLLLHG EEEECCCCCCCCCCCEEEHHHCCCCEEECCCEEECCCCCEEECCCCEECCCCCEEEEEEC GIVYRLSKDYRTAEEKVVSGVGGSHGESPAMFKKDGTYFFLFSNLTSWEKNDNFYFTAPS CEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCEEEECCC VKGPWTRQGLFAPEGSLTYNSQTTFVFPLKCGEDTIPMFMGDRWSYPHQASAATYVWMPM CCCCCCCCCCCCCCCCEEECCCEEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEEE QVDGTKLSIPEYWPSWDVDKLKPVNPLRKGKTVDLKKITFSKEADWKVEEGRISSNVKGS EECCCEEECCCCCCCCCCCCCCCCCHHHCCCEEEEEEEEECCCCCCEEECCEECCCCCCC TLSIPFTGSCVAVMGETNCHSGYARMNILDKKGEKIYSSLVDFYSKANDHATRFKTPQLA EEEEEECCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCCCC EGEYTLVIEVTGISPTWTDKTKRIYGSDDCFVTITDIVKL CCCEEEEEEEECCCCCCCCCCCEEECCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA