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The map label for this gene is rbfA [H]

Identifier: 29348248

GI number: 29348248

Start: 3542119

End: 3542451

Strand: Reverse

Name: rbfA [H]

Synonym: BT_2839

Alternate gene names: 29348248

Gene position: 3542451-3542119 (Counterclockwise)

Preceding gene: 29348249

Following gene: 29348247

Centisome position: 56.59

GC content: 44.44

Gene sequence:

>333_bases
ATGGAAACAACCAGACAGAATAAGATATCCCGCCTGTTACAGAAGGAGCTGAGCGAGATATTCCTGCTTCAGACAAAGGC
AATGCCGGGTATATTAATATCGGTCAGCGCAGTTCGTATCAGTCCTGATATGAGTATTGCGCGCGTGTACCTGAGCGTTT
TCCCGTCAGAGAAAGCAGAAGAAATGGTGAAGAATATCAATGAGAACATGAAGTCCATTCGCTTTGAGCTCGGAACCCGT
GTGCGTCATCAATTACGGATTATTCCCGAATTGAAGTTCTTCGTGGACGACTCACTGGATTATATTGAGAAGATTGATTC
TTTGCTGAAGTGA

Upstream 100 bases:

>100_bases
AATGACGCCCTTGTGACGGACGACCGGGTGGAGAAAGTAATCCTGCCTTTGCGTGATGGGTTAACTATAATAAGAAAAAA
GTAAGATAAGGAGTAAATTT

Downstream 100 bases:

>100_bases
ATTTTCCCTTCTACATAGCTCGGCGTTATCTTTTCTCGAAAAAGAAGCATAATGCTATCAATATTATTTCCGGCATATCA
GTATGCGGGGTGGCACTTGC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
METTRQNKISRLLQKELSEIFLLQTKAMPGILISVSAVRISPDMSIARVYLSVFPSEKAEEMVKNINENMKSIRFELGTR
VRHQLRIIPELKFFVDDSLDYIEKIDSLLK

Sequences:

>Translated_110_residues
METTRQNKISRLLQKELSEIFLLQTKAMPGILISVSAVRISPDMSIARVYLSVFPSEKAEEMVKNINENMKSIRFELGTR
VRHQLRIIPELKFFVDDSLDYIEKIDSLLK
>Mature_110_residues
METTRQNKISRLLQKELSEIFLLQTKAMPGILISVSAVRISPDMSIARVYLSVFPSEKAEEMVKNINENMKSIRFELGTR
VRHQLRIIPELKFFVDDSLDYIEKIDSLLK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 12784; Mature: 12784

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METTRQNKISRLLQKELSEIFLLQTKAMPGILISVSAVRISPDMSIARVYLSVFPSEKAE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHEEECCCHHHHHHHHHHCCCHHHH
EMVKNINENMKSIRFELGTRVRHQLRIIPELKFFVDDSLDYIEKIDSLLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
>Mature Secondary Structure
METTRQNKISRLLQKELSEIFLLQTKAMPGILISVSAVRISPDMSIARVYLSVFPSEKAE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHEEECCCHHHHHHHHHHCCCHHHH
EMVKNINENMKSIRFELGTRVRHQLRIIPELKFFVDDSLDYIEKIDSLLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA