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The map label for this gene is 29347788

Identifier: 29347788

GI number: 29347788

Start: 2965174

End: 2966622

Strand: Reverse

Name: 29347788

Synonym: BT_2378

Alternate gene names: NA

Gene position: 2966622-2965174 (Counterclockwise)

Preceding gene: 29347789

Following gene: 29347787

Centisome position: 47.39

GC content: 42.72

Gene sequence:

>1449_bases
ATGAATTATCCAAAAGCGATACTTCTTTCATTGGCGTTATTGGCTATGCATTCGCTTAATGCAGAGGTAGTCACATACCC
TGCTGGGGTCGGGGTGAAAACCTTAAACGATTTTTCTGTGGAAGTGCGTCAGGGTAGCGGACCGTGGTTGCCCGTTGACG
TTTATCCTGTTAAAGTTGATAGGGTTGATGAAAAAGGTCATAACGTAGAGGTTGCCTCCATTGCTTATTTCGATTTTGAC
GGAATGGTAGATGTGCGAGTAATCAGCAACAAAGAGAGAGTCAATAGTGTGAGAGTACGTCCTTTAAGCTATAAGATAAC
ACCGGATTGTGTTGGAGACACAGTGACATTCTCACTTTCGCGTCCTCGCAATCTCTCAGTAGAGGTCAATGGAGATATTT
TTCACAATCTTCATCTTTTTGCGAATCCGATTGATAAATTTCGTCCTTCCGATAAAGAAATCCAAAGGGCTCTCAAGAAA
AAAAAAGGGTCCAATTTGATTTATTTTGGTCCCGGTGTGCATAATCTTCCTAATGATACTCTATTTGTCCCCTCAGGAAC
TACTGTTTATATCGATGGGGGAGCTCGTGTTTATGGCAATATATTCACGGAAGGAGCACATGATGTGAATATTTTCGGGA
GAGGCGAGGTACACCCTGATGGCAGGGGAGCCGGTGTTTGGGTCAGACGTTCTAAAAATGTCAGGATCGACGGAATTGTG
GTTTCGCAACTCCCCATAGGACAATGCGATTCGGTAGAGTTGACGAATGTGAAATCAATCAGCTATTATGGTTGGGGCGA
CGGAATGGATGTTTTCTCAAGCAGTAACGTGATATTAGATGGGGTTTTCTGTCGTAATAGTGATGACTGTGCCGCAGTTT
ATGCTTCTACGCAAGGATTTAAAGGGGGAAGCAATAATGTATTGGTGAAAAATGCGACACTTTGGGCTGACGTGGCTCAT
CCAATCAATATCGGAGGACATGGAGATCCGAACGGCATGGATACAGTGCAGAACGTCACTTTTAGGAATATCGACATTCT
TGATCAGGCAGAAAAACAGATTGATTATCAGGGATGTCTGGCTATAAATCCAGGCGACAATACATTGGTGCGTAATATTA
CGTTCGAGAATATTCGGATTGAAGATTTTCGTAACGGACAGCTTGTGAATTTCAGAATCAGTTTCAATCCGAAGTATTGT
GTCTCTACTGGCAGAGGTATTCAGAATGTGCTTGTTAAGGATGTTACTTACAATGGATCGGGTGAAAACTTGTCGATCAT
TGCAGGGTATGATGAGAATCACAAGATATCTGGTATCAGGTTTGTGAATCTTGTGGTCAATGGGCGAAAGATTACAGACG
ACATGCCTGGGAAGCCGAAATGGTATAAAACCGGAGATATGGCCGGTATCTTTGTTGGAGAACATGTAGAAAATCTCTCT
TTTGAATAG

Upstream 100 bases:

>100_bases
GTAAAAATATTCATTCTTCTGTTGGGCGCTTTTTATAGTCAAAACGTATTCAAATTAGAGTGATTAATAAATTTCAATAT
CAAATTTAAAATCAAAGAAT

Downstream 100 bases:

>100_bases
AAACGAAGCAGACAGAATGTTAGAAATGGCGCCACATGCCAAAAACTGTCATGCGGTCAGAAGGAAAGATTATACTTCAA
TTTTTATCACAATATAGATA

Product: endo-polygalacturonase

Products: NA

Alternate protein names: Glycoside Hydrolase Family; Endopygalactorunase-Like Protein; Transmembrane Protein; Parallel Beta-Helix Repeat Protein; Coagulation Factor 5/8 Type Domain Protein; F5/8 Type C Domain Protein

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MNYPKAILLSLALLAMHSLNAEVVTYPAGVGVKTLNDFSVEVRQGSGPWLPVDVYPVKVDRVDEKGHNVEVASIAYFDFD
GMVDVRVISNKERVNSVRVRPLSYKITPDCVGDTVTFSLSRPRNLSVEVNGDIFHNLHLFANPIDKFRPSDKEIQRALKK
KKGSNLIYFGPGVHNLPNDTLFVPSGTTVYIDGGARVYGNIFTEGAHDVNIFGRGEVHPDGRGAGVWVRRSKNVRIDGIV
VSQLPIGQCDSVELTNVKSISYYGWGDGMDVFSSSNVILDGVFCRNSDDCAAVYASTQGFKGGSNNVLVKNATLWADVAH
PINIGGHGDPNGMDTVQNVTFRNIDILDQAEKQIDYQGCLAINPGDNTLVRNITFENIRIEDFRNGQLVNFRISFNPKYC
VSTGRGIQNVLVKDVTYNGSGENLSIIAGYDENHKISGIRFVNLVVNGRKITDDMPGKPKWYKTGDMAGIFVGEHVENLS
FE

Sequences:

>Translated_482_residues
MNYPKAILLSLALLAMHSLNAEVVTYPAGVGVKTLNDFSVEVRQGSGPWLPVDVYPVKVDRVDEKGHNVEVASIAYFDFD
GMVDVRVISNKERVNSVRVRPLSYKITPDCVGDTVTFSLSRPRNLSVEVNGDIFHNLHLFANPIDKFRPSDKEIQRALKK
KKGSNLIYFGPGVHNLPNDTLFVPSGTTVYIDGGARVYGNIFTEGAHDVNIFGRGEVHPDGRGAGVWVRRSKNVRIDGIV
VSQLPIGQCDSVELTNVKSISYYGWGDGMDVFSSSNVILDGVFCRNSDDCAAVYASTQGFKGGSNNVLVKNATLWADVAH
PINIGGHGDPNGMDTVQNVTFRNIDILDQAEKQIDYQGCLAINPGDNTLVRNITFENIRIEDFRNGQLVNFRISFNPKYC
VSTGRGIQNVLVKDVTYNGSGENLSIIAGYDENHKISGIRFVNLVVNGRKITDDMPGKPKWYKTGDMAGIFVGEHVENLS
FE
>Mature_482_residues
MNYPKAILLSLALLAMHSLNAEVVTYPAGVGVKTLNDFSVEVRQGSGPWLPVDVYPVKVDRVDEKGHNVEVASIAYFDFD
GMVDVRVISNKERVNSVRVRPLSYKITPDCVGDTVTFSLSRPRNLSVEVNGDIFHNLHLFANPIDKFRPSDKEIQRALKK
KKGSNLIYFGPGVHNLPNDTLFVPSGTTVYIDGGARVYGNIFTEGAHDVNIFGRGEVHPDGRGAGVWVRRSKNVRIDGIV
VSQLPIGQCDSVELTNVKSISYYGWGDGMDVFSSSNVILDGVFCRNSDDCAAVYASTQGFKGGSNNVLVKNATLWADVAH
PINIGGHGDPNGMDTVQNVTFRNIDILDQAEKQIDYQGCLAINPGDNTLVRNITFENIRIEDFRNGQLVNFRISFNPKYC
VSTGRGIQNVLVKDVTYNGSGENLSIIAGYDENHKISGIRFVNLVVNGRKITDDMPGKPKWYKTGDMAGIFVGEHVENLS
FE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53010; Mature: 53010

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYPKAILLSLALLAMHSLNAEVVTYPAGVGVKTLNDFSVEVRQGSGPWLPVDVYPVKVD
CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEEEECCCCCEEEEEEEEEEEE
RVDEKGHNVEVASIAYFDFDGMVDVRVISNKERVNSVRVRPLSYKITPDCVGDTVTFSLS
EECCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEEEC
RPRNLSVEVNGDIFHNLHLFANPIDKFRPSDKEIQRALKKKKGSNLIYFGPGVHNLPNDT
CCCEEEEEECCCEEEEEEEEECCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCE
LFVPSGTTVYIDGGARVYGNIFTEGAHDVNIFGRGEVHPDGRGAGVWVRRSKNVRIDGIV
EEECCCCEEEECCCCEEEEEEECCCCCEEEEEECCEECCCCCCCEEEEEECCCEEEEEEE
VSQLPIGQCDSVELTNVKSISYYGWGDGMDVFSSSNVILDGVFCRNSDDCAAVYASTQGF
EECCCCCCCCCEEEECEEEEEEEECCCCCHHCCCCCEEEEEEEECCCCCEEEEEEECCCC
KGGSNNVLVKNATLWADVAHPINIGGHGDPNGMDTVQNVTFRNIDILDQAEKQIDYQGCL
CCCCCCEEEEECEEEEECCCEEECCCCCCCCCCCHHHCCEEECEEHHHHHHHCCCCCCEE
AINPGDNTLVRNITFENIRIEDFRNGQLVNFRISFNPKYCVSTGRGIQNVLVKDVTYNGS
EECCCCCEEEEEEEEEEEEEEECCCCEEEEEEEECCCCEEEECCCCHHHEEEEEEEECCC
GENLSIIAGYDENHKISGIRFVNLVVNGRKITDDMPGKPKWYKTGDMAGIFVGEHVENLS
CCEEEEEEECCCCCEECCEEEEEEEEECEEECCCCCCCCCEEECCCEEEEEECCCCCCCC
FE
CC
>Mature Secondary Structure
MNYPKAILLSLALLAMHSLNAEVVTYPAGVGVKTLNDFSVEVRQGSGPWLPVDVYPVKVD
CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEEEECCCCCEEEEEEEEEEEE
RVDEKGHNVEVASIAYFDFDGMVDVRVISNKERVNSVRVRPLSYKITPDCVGDTVTFSLS
EECCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEEEC
RPRNLSVEVNGDIFHNLHLFANPIDKFRPSDKEIQRALKKKKGSNLIYFGPGVHNLPNDT
CCCEEEEEECCCEEEEEEEEECCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCE
LFVPSGTTVYIDGGARVYGNIFTEGAHDVNIFGRGEVHPDGRGAGVWVRRSKNVRIDGIV
EEECCCCEEEECCCCEEEEEEECCCCCEEEEEECCEECCCCCCCEEEEEECCCEEEEEEE
VSQLPIGQCDSVELTNVKSISYYGWGDGMDVFSSSNVILDGVFCRNSDDCAAVYASTQGF
EECCCCCCCCCEEEECEEEEEEEECCCCCHHCCCCCEEEEEEEECCCCCEEEEEEECCCC
KGGSNNVLVKNATLWADVAHPINIGGHGDPNGMDTVQNVTFRNIDILDQAEKQIDYQGCL
CCCCCCEEEEECEEEEECCCEEECCCCCCCCCCCHHHCCEEECEEHHHHHHHCCCCCCEE
AINPGDNTLVRNITFENIRIEDFRNGQLVNFRISFNPKYCVSTGRGIQNVLVKDVTYNGS
EECCCCCEEEEEEEEEEEEEEECCCCEEEEEEEECCCCEEEECCCCHHHEEEEEEEECCC
GENLSIIAGYDENHKISGIRFVNLVVNGRKITDDMPGKPKWYKTGDMAGIFVGEHVENLS
CCEEEEEEECCCCCEECCEEEEEEEEECEEECCCCCCCCCEEECCCEEEEEECCCCCCCC
FE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA