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The map label for this gene is yvoA [H]

Identifier: 29347513

GI number: 29347513

Start: 2637169

End: 2637903

Strand: Reverse

Name: yvoA [H]

Synonym: BT_2103

Alternate gene names: 29347513

Gene position: 2637903-2637169 (Counterclockwise)

Preceding gene: 29347524

Following gene: 29347506

Centisome position: 42.14

GC content: 36.33

Gene sequence:

>735_bases
ATGAAGATATTAGTTAACCATAACAGCGCAATCCCCCTTTATCTTCAGATAGAAGAACAGTTGAGGACTATTATCAAAGG
GGAGGAATATAAACAAGGTAAAATGCTTCCAAATGAAATTGATTTGTCTAAACAATTGGGCATATCTCGTAATACCTTGA
GACAGGCGATTAATAACCTTGTGAACGAAGGATTGCTGATGAGGAAAAAGGGAGTAGGTACAGTTGTTGTAAATTCAGCT
GTATGTTCCAAAGCTCAGAATTGGATGAGTTTCACACAGGAAATGAAAACTTTGGGAATTGTACCAATGAATTATGAACT
TCATGTTAGCTGGACAAAGCCTACAGATGATATAGCCCTTTTTTTTAATGCTCCTGATGTAAAAAGAATACTGAAGTTAG
AGCGTTTACGTGGAAATCAAGAATACCCTTTCGTGTACTTTATATCCTATTTTAATCCTAAAATAGGTTTAACAGGAAGT
GAGGATTTCTCCAGACCTCTTTATGAGATATTGGAAAGAGATTATCATGCTATTGCAAAAGTTTCTAAAGAAGATATTAG
TGCCAGGCTGGCTGACAAGTACATTGCTGGTAAGCTTGAGATAAAGGTCGGAGATCCAATTTTGGTGCGTAAAAGGTTTG
TTTATGATCCCGAAGGGTGTCCGTTGGAATGGAATATAGGATATTATCGTGCGGACAGTTTTATTTATTCACTTGAGTTT
GAGAGAAATATTTGA

Upstream 100 bases:

>100_bases
CTGAACATATAAACATTTGCAAATGTATTCTTTTTCTTGAAAAGAACAAAAAGTATTGCCTGTTTTTATTTTTATTTTTA
TCTTTGTAAAAAAGTTAATC

Downstream 100 bases:

>100_bases
TCTTATACTCATAAAAAAAGTGAAGATTATAAGGATGCCCGAATCCTGCTCAGCGACTGCGGTGTTATCCACAGATAAGA
TGCAATGTACTTTAAAGGCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKILVNHNSAIPLYLQIEEQLRTIIKGEEYKQGKMLPNEIDLSKQLGISRNTLRQAINNLVNEGLLMRKKGVGTVVVNSA
VCSKAQNWMSFTQEMKTLGIVPMNYELHVSWTKPTDDIALFFNAPDVKRILKLERLRGNQEYPFVYFISYFNPKIGLTGS
EDFSRPLYEILERDYHAIAKVSKEDISARLADKYIAGKLEIKVGDPILVRKRFVYDPEGCPLEWNIGYYRADSFIYSLEF
ERNI

Sequences:

>Translated_244_residues
MKILVNHNSAIPLYLQIEEQLRTIIKGEEYKQGKMLPNEIDLSKQLGISRNTLRQAINNLVNEGLLMRKKGVGTVVVNSA
VCSKAQNWMSFTQEMKTLGIVPMNYELHVSWTKPTDDIALFFNAPDVKRILKLERLRGNQEYPFVYFISYFNPKIGLTGS
EDFSRPLYEILERDYHAIAKVSKEDISARLADKYIAGKLEIKVGDPILVRKRFVYDPEGCPLEWNIGYYRADSFIYSLEF
ERNI
>Mature_244_residues
MKILVNHNSAIPLYLQIEEQLRTIIKGEEYKQGKMLPNEIDLSKQLGISRNTLRQAINNLVNEGLLMRKKGVGTVVVNSA
VCSKAQNWMSFTQEMKTLGIVPMNYELHVSWTKPTDDIALFFNAPDVKRILKLERLRGNQEYPFVYFISYFNPKIGLTGS
EDFSRPLYEILERDYHAIAKVSKEDISARLADKYIAGKLEIKVGDPILVRKRFVYDPEGCPLEWNIGYYRADSFIYSLEF
ERNI

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=238, Percent_Identity=24.7899159663866, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790540, Length=243, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28206; Mature: 28206

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILVNHNSAIPLYLQIEEQLRTIIKGEEYKQGKMLPNEIDLSKQLGISRNTLRQAINNL
CEEEEECCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHH
VNEGLLMRKKGVGTVVVNSAVCSKAQNWMSFTQEMKTLGIVPMNYELHVSWTKPTDDIAL
HHCCEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHCEEECCEEEEEEECCCCCCEEE
FFNAPDVKRILKLERLRGNQEYPFVYFISYFNPKIGLTGSEDFSRPLYEILERDYHAIAK
EECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VSKEDISARLADKYIAGKLEIKVGDPILVRKRFVYDPEGCPLEWNIGYYRADSFIYSLEF
HHHHHHHHHHHHHHHEEEEEEEECCCEEEEEEEEECCCCCEEEECCCEEEECEEEEEEEE
ERNI
ECCC
>Mature Secondary Structure
MKILVNHNSAIPLYLQIEEQLRTIIKGEEYKQGKMLPNEIDLSKQLGISRNTLRQAINNL
CEEEEECCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHH
VNEGLLMRKKGVGTVVVNSAVCSKAQNWMSFTQEMKTLGIVPMNYELHVSWTKPTDDIAL
HHCCEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHCEEECCEEEEEEECCCCCCEEE
FFNAPDVKRILKLERLRGNQEYPFVYFISYFNPKIGLTGSEDFSRPLYEILERDYHAIAK
EECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VSKEDISARLADKYIAGKLEIKVGDPILVRKRFVYDPEGCPLEWNIGYYRADSFIYSLEF
HHHHHHHHHHHHHHHEEEEEEEECCCEEEEEEEEECCCCCEEEECCCEEEECEEEEEEEE
ERNI
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]