| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29347362
Identifier: 29347362
GI number: 29347362
Start: 2450813
End: 2451952
Strand: Reverse
Name: 29347362
Synonym: BT_1952
Alternate gene names: NA
Gene position: 2451952-2450813 (Counterclockwise)
Preceding gene: 29347363
Following gene: 29347361
Centisome position: 39.17
GC content: 50.79
Gene sequence:
>1140_bases ATGAACGCATTAAAGAATTTAAGCCTGATTTTGTTGCTTTCTCTGGCATTTACAGGCTGCCACAACAAAAGCTCAAAAAT CAATGATTTCAACCTGCTGCTTTATGCTCCCGAATATGCCTCCGGCTTCGACATCAAAGGGGCGGGCGGGAAGGAAAGCG TACTGATAACCGTCAGGAATCCCTGGCAGGGAGCGGACAGTGTAACCACATGGCTGTTTATCGTCCGCAACGGTGAAGAG GTTCCCGAAGGGTTTGCAGGACAGGTACTCAAAGGAGACGCCAAACGCATCGTGGCGATGTCTTCCACTCATATCGCCAT GCTTGACGCAATCGGTGAAGTCCGGTGTATAACCGGCGTTTCGGGAATCGACTACATTTCCAACCCAGACATCCAAGCCC GCCGCGACAGTATTGGCGATGTCGGCTATGAAGGGAACATCAACTACGAGTTGCTGCTCTCGCTCGATCCCGACCTCGTT CTGCTCTATGGGGTGAACGGCGCAAGCGCAATGGAAAGCAAACTCGAAGAACTCGACATACCGTTCATGTATGTCGGCGA TTATCTTGAAGAGTCGCCTCTCGGCAAGGCCGAATGGATGGTAGTGCTTTCAGAAGTCACAGGAAAACGTGAGAAGGGTG AAAAAGCCTTTGCCGCAATCCCGGTCAGATACAACGCCTTGAAAAAGAAAGTGGCCGACAGTACCCTCGGCACTCCTTCG GTTATGCTTAATGTTCCCTATGGCGACTCGTGGTTCATGCCTTCAACCCAAAGTTATGTAGCCCGCTTGATTACTGATGC GGGAGGCCGCTATATCTACCAGAAGAACACGGGAAACGCTTCTATCCCCATTGACTTAGAAGAAGCATATCTGCTCGCGT CGGATGCGGACATGTGGCTGAACGTGGGAATGGCGAACTCCCTTGACGACTTGAAGGCATCATGTCCGAAATTCACCGAT ACCCGATGTTTCAAAAATGGAGAGGTGTATAACAACAACGCCCGTACCAACACAGCCGGGGGTAACGACTATTACGAGTC TGCCGTCGTGAATCCTGACATCGTGCTCCGCGACCTCGTGAAGATATTCCATCCTGAACTGGTGCAGGAAGAGTGTGTGT ATTACAAGCAACTGAAATAG
Upstream 100 bases:
>100_bases TATTGTCCCGTCCCATGCCGGGCATCAATTTCGAGATATTCATCGGCATAACACCCAAGTTCGGAAAAAACAAAAATAGT AAACGATAATCTGCATCAAT
Downstream 100 bases:
>100_bases ATGCGTTCCCGTTCGACTATATTATTCTCCATATTGATTACGCTCACGGTCGGTCTTTTTTTACTGGACTTGGCCGTGGG AGCTGTCAACATTCCGATCC
Product: Fe3+ ABC transporter periplasmic iron-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MNALKNLSLILLLSLAFTGCHNKSSKINDFNLLLYAPEYASGFDIKGAGGKESVLITVRNPWQGADSVTTWLFIVRNGEE VPEGFAGQVLKGDAKRIVAMSSTHIAMLDAIGEVRCITGVSGIDYISNPDIQARRDSIGDVGYEGNINYELLLSLDPDLV LLYGVNGASAMESKLEELDIPFMYVGDYLEESPLGKAEWMVVLSEVTGKREKGEKAFAAIPVRYNALKKKVADSTLGTPS VMLNVPYGDSWFMPSTQSYVARLITDAGGRYIYQKNTGNASIPIDLEEAYLLASDADMWLNVGMANSLDDLKASCPKFTD TRCFKNGEVYNNNARTNTAGGNDYYESAVVNPDIVLRDLVKIFHPELVQEECVYYKQLK
Sequences:
>Translated_379_residues MNALKNLSLILLLSLAFTGCHNKSSKINDFNLLLYAPEYASGFDIKGAGGKESVLITVRNPWQGADSVTTWLFIVRNGEE VPEGFAGQVLKGDAKRIVAMSSTHIAMLDAIGEVRCITGVSGIDYISNPDIQARRDSIGDVGYEGNINYELLLSLDPDLV LLYGVNGASAMESKLEELDIPFMYVGDYLEESPLGKAEWMVVLSEVTGKREKGEKAFAAIPVRYNALKKKVADSTLGTPS VMLNVPYGDSWFMPSTQSYVARLITDAGGRYIYQKNTGNASIPIDLEEAYLLASDADMWLNVGMANSLDDLKASCPKFTD TRCFKNGEVYNNNARTNTAGGNDYYESAVVNPDIVLRDLVKIFHPELVQEECVYYKQLK >Mature_379_residues MNALKNLSLILLLSLAFTGCHNKSSKINDFNLLLYAPEYASGFDIKGAGGKESVLITVRNPWQGADSVTTWLFIVRNGEE VPEGFAGQVLKGDAKRIVAMSSTHIAMLDAIGEVRCITGVSGIDYISNPDIQARRDSIGDVGYEGNINYELLLSLDPDLV LLYGVNGASAMESKLEELDIPFMYVGDYLEESPLGKAEWMVVLSEVTGKREKGEKAFAAIPVRYNALKKKVADSTLGTPS VMLNVPYGDSWFMPSTQSYVARLITDAGGRYIYQKNTGNASIPIDLEEAYLLASDADMWLNVGMANSLDDLKASCPKFTD TRCFKNGEVYNNNARTNTAGGNDYYESAVVNPDIVLRDLVKIFHPELVQEECVYYKQLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002491 [H]
Pfam domain/function: PF01497 Peripla_BP_2 [H]
EC number: NA
Molecular weight: Translated: 41658; Mature: 41658
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALKNLSLILLLSLAFTGCHNKSSKINDFNLLLYAPEYASGFDIKGAGGKESVLITVRN CCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCEEEEEECC PWQGADSVTTWLFIVRNGEEVPEGFAGQVLKGDAKRIVAMSSTHIAMLDAIGEVRCITGV CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEHHHCCCEEEEECC SGIDYISNPDIQARRDSIGDVGYEGNINYELLLSLDPDLVLLYGVNGASAMESKLEELDI CCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHCCC PFMYVGDYLEESPLGKAEWMVVLSEVTGKREKGEKAFAAIPVRYNALKKKVADSTLGTPS CEEEECCHHHCCCCCCHHHEEEEEHHCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCE VMLNVPYGDSWFMPSTQSYVARLITDAGGRYIYQKNTGNASIPIDLEEAYLLASDADMWL EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEHHHEEEEECCCCEEE NVGMANSLDDLKASCPKFTDTRCFKNGEVYNNNARTNTAGGNDYYESAVVNPDIVLRDLV ECCCCCCHHHHHHCCCCCCCCCEECCCCEECCCCCCCCCCCCCHHHHCCCCHHHHHHHHH KIFHPELVQEECVYYKQLK HHHCHHHHHHHHHHHHCCC >Mature Secondary Structure MNALKNLSLILLLSLAFTGCHNKSSKINDFNLLLYAPEYASGFDIKGAGGKESVLITVRN CCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCEEEEEECC PWQGADSVTTWLFIVRNGEEVPEGFAGQVLKGDAKRIVAMSSTHIAMLDAIGEVRCITGV CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEHHHCCCEEEEECC SGIDYISNPDIQARRDSIGDVGYEGNINYELLLSLDPDLVLLYGVNGASAMESKLEELDI CCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHCCC PFMYVGDYLEESPLGKAEWMVVLSEVTGKREKGEKAFAAIPVRYNALKKKVADSTLGTPS CEEEECCHHHCCCCCCHHHEEEEEHHCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCE VMLNVPYGDSWFMPSTQSYVARLITDAGGRYIYQKNTGNASIPIDLEEAYLLASDADMWL EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEHHHEEEEECCCCEEE NVGMANSLDDLKASCPKFTDTRCFKNGEVYNNNARTNTAGGNDYYESAVVNPDIVLRDLV ECCCCCCHHHHHHCCCCCCCCCEECCCCEECCCCCCCCCCCCCHHHHCCCCHHHHHHHHH KIFHPELVQEECVYYKQLK HHHCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]