| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is cbpA [H]
Identifier: 29347222
GI number: 29347222
Start: 2273834
End: 2274799
Strand: Reverse
Name: cbpA [H]
Synonym: BT_1812
Alternate gene names: 29347222
Gene position: 2274799-2273834 (Counterclockwise)
Preceding gene: 29347223
Following gene: 29347221
Centisome position: 36.34
GC content: 48.45
Gene sequence:
>966_bases ATGGCTTATATAGATTATTATAAGATTCTTGGAGTTGACAAAAGTGCTTCTCAGGATGATATAAAGAAGGCTTTTCGTAA GTTGGCCCGGAAGTATCATCCTGACCTGAACCCTAATGACCCAAGTGCGAAGGACAAGTTTCAGGAAATCAATGAAGCCA ATGAAGTACTGAGTGACCCTGAGAAGCGTAAGAAGTATGACGAGTATGGGGAGCATTGGAAACATGCCGATGAGTTTGAA GCTCAGAAAAAAGCGCGGCAGCAAGCCGGTGGCTTTGGCGGTGCCGGAGGCTTCGGCGGATTCGGTGGTGGCGGTCAGGG ATTCTCTGATGGTGACGGAACGTATTGGTATTCGTCCGACGGTGGCAAAGGATTCTCCGGAGGTAATGCCGGTGGTTTCT CCGATTTCTTCGAATCGATGTTCGGGCATCGGGGCAGAGGACAAAGCTCTGCCGGATTCCGTGGACAGGACTTTAATGCG GAGCTTCATCTTTCACTGCGTGATGCTGCTCAGACGCATAAACAGATATTGACTGTCAATGGTAAACAAGTACGTATTAC GATTCCCGCAGGCGTGGCCGACGGGCAGGTGATTAAACTGAAAGGTTACGGAGCTGAAGGTGTGAACGGAGGTCCGGCCG GTGACTTGTATATCACTTTCGTCATTGCCGAAGACCCTGTATTCAAGCGCTTGGGCGATGACTTGTACGTAGACGTGGAA GTAGACCTTTATACTGCTGTATTGGGTGGTGATAAAGTCGTTGACACGCTGGACGGTAAAGTGAAACTGAAGATCAAACC GGAGACTCAGAACGGTACGAAAGTACGTCTGAAAGGCAAGGGATTCCCGGTCTATAAGAAAGAAGGACAATTCGGTGACT TGATTGTTACCTATTCCGTCAAGATTCCGACGAATCTGACAGAAGCGCAGAAGGAGTTGTTCCGTCAATTACAGAGTATG AACTAA
Upstream 100 bases:
>100_bases CCTATTACTTATTCATTAATCCTTGTTAATTCTTATATCCAAAAGCATGATTGGCGTGTTATTTGCGATATAAAAGTATG AACGATTAAATTCATAAAAC
Downstream 100 bases:
>100_bases AATGAATGAGCACTATGCAGACCGAATTAATTATTGTCAGTGAATACTGTCAGAAGTGTCATATTGAACCTTCATTCATT GAGATGCTGGAAGAAGGTGG
Product: putative chaperone DnAJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MAYIDYYKILGVDKSASQDDIKKAFRKLARKYHPDLNPNDPSAKDKFQEINEANEVLSDPEKRKKYDEYGEHWKHADEFE AQKKARQQAGGFGGAGGFGGFGGGGQGFSDGDGTYWYSSDGGKGFSGGNAGGFSDFFESMFGHRGRGQSSAGFRGQDFNA ELHLSLRDAAQTHKQILTVNGKQVRITIPAGVADGQVIKLKGYGAEGVNGGPAGDLYITFVIAEDPVFKRLGDDLYVDVE VDLYTAVLGGDKVVDTLDGKVKLKIKPETQNGTKVRLKGKGFPVYKKEGQFGDLIVTYSVKIPTNLTEAQKELFRQLQSM N
Sequences:
>Translated_321_residues MAYIDYYKILGVDKSASQDDIKKAFRKLARKYHPDLNPNDPSAKDKFQEINEANEVLSDPEKRKKYDEYGEHWKHADEFE AQKKARQQAGGFGGAGGFGGFGGGGQGFSDGDGTYWYSSDGGKGFSGGNAGGFSDFFESMFGHRGRGQSSAGFRGQDFNA ELHLSLRDAAQTHKQILTVNGKQVRITIPAGVADGQVIKLKGYGAEGVNGGPAGDLYITFVIAEDPVFKRLGDDLYVDVE VDLYTAVLGGDKVVDTLDGKVKLKIKPETQNGTKVRLKGKGFPVYKKEGQFGDLIVTYSVKIPTNLTEAQKELFRQLQSM N >Mature_320_residues AYIDYYKILGVDKSASQDDIKKAFRKLARKYHPDLNPNDPSAKDKFQEINEANEVLSDPEKRKKYDEYGEHWKHADEFEA QKKARQQAGGFGGAGGFGGFGGGGQGFSDGDGTYWYSSDGGKGFSGGNAGGFSDFFESMFGHRGRGQSSAGFRGQDFNAE LHLSLRDAAQTHKQILTVNGKQVRITIPAGVADGQVIKLKGYGAEGVNGGPAGDLYITFVIAEDPVFKRLGDDLYVDVEV DLYTAVLGGDKVVDTLDGKVKLKIKPETQNGTKVRLKGKGFPVYKKEGQFGDLIVTYSVKIPTNLTEAQKELFRQLQSMN
Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasm, nucleoid [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI205360840, Length=365, Percent_Identity=30.6849315068493, Blast_Score=148, Evalue=7e-36, Organism=Homo sapiens, GI205360838, Length=353, Percent_Identity=30.3116147308782, Blast_Score=147, Evalue=9e-36, Organism=Homo sapiens, GI7706495, Length=329, Percent_Identity=32.8267477203647, Blast_Score=141, Evalue=7e-34, Organism=Homo sapiens, GI6631085, Length=336, Percent_Identity=32.4404761904762, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI56549115, Length=348, Percent_Identity=31.6091954022989, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI201862518, Length=348, Percent_Identity=31.6091954022989, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI201862587, Length=348, Percent_Identity=31.6091954022989, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI5453690, Length=347, Percent_Identity=29.1066282420749, Blast_Score=122, Evalue=3e-28, Organism=Homo sapiens, GI4504511, Length=337, Percent_Identity=28.7833827893175, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI39204547, Length=338, Percent_Identity=28.9940828402367, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI5031741, Length=345, Percent_Identity=29.2753623188406, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI194328760, Length=328, Percent_Identity=26.8292682926829, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI45504382, Length=64, Percent_Identity=60.9375, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI24308127, Length=67, Percent_Identity=58.2089552238806, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI56687498, Length=67, Percent_Identity=58.2089552238806, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI29126218, Length=64, Percent_Identity=57.8125, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI4885495, Length=67, Percent_Identity=58.2089552238806, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI9558755, Length=71, Percent_Identity=59.1549295774648, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI17388799, Length=67, Percent_Identity=58.2089552238806, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI194306642, Length=67, Percent_Identity=55.2238805970149, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI194306640, Length=67, Percent_Identity=55.2238805970149, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI21553335, Length=68, Percent_Identity=55.8823529411765, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI47777312, Length=69, Percent_Identity=55.0724637681159, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI194328758, Length=67, Percent_Identity=59.7014925373134, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI88501736, Length=66, Percent_Identity=59.0909090909091, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI23503241, Length=72, Percent_Identity=54.1666666666667, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI27151736, Length=66, Percent_Identity=59.0909090909091, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI72534740, Length=156, Percent_Identity=37.8205128205128, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI22749377, Length=67, Percent_Identity=55.2238805970149, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI5453980, Length=111, Percent_Identity=44.1441441441441, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1787235, Length=332, Percent_Identity=34.3373493975904, Blast_Score=173, Evalue=1e-44, Organism=Escherichia coli, GI1786197, Length=137, Percent_Identity=43.7956204379562, Blast_Score=117, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17534355, Length=344, Percent_Identity=32.8488372093023, Blast_Score=132, Evalue=2e-31, Organism=Caenorhabditis elegans, GI17554644, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI212645553, Length=67, Percent_Identity=58.2089552238806, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI115532378, Length=143, Percent_Identity=34.2657342657343, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17568643, Length=69, Percent_Identity=55.0724637681159, Blast_Score=78, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17553096, Length=63, Percent_Identity=60.3174603174603, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17553098, Length=63, Percent_Identity=60.3174603174603, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17538236, Length=66, Percent_Identity=53.030303030303, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17554900, Length=64, Percent_Identity=51.5625, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115532476, Length=66, Percent_Identity=48.4848484848485, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17563890, Length=64, Percent_Identity=56.25, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17507263, Length=63, Percent_Identity=49.2063492063492, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324321, Length=346, Percent_Identity=30.9248554913295, Blast_Score=99, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6323870, Length=66, Percent_Identity=54.5454545454545, Blast_Score=79, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6322194, Length=66, Percent_Identity=54.5454545454545, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6323813, Length=137, Percent_Identity=40.8759124087591, Blast_Score=76, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6324265, Length=66, Percent_Identity=56.0606060606061, Blast_Score=76, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6320888, Length=111, Percent_Identity=40.5405405405405, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324252, Length=210, Percent_Identity=29.0476190476191, Blast_Score=67, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6322388, Length=68, Percent_Identity=54.4117647058823, Blast_Score=66, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6324103, Length=68, Percent_Identity=51.4705882352941, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323119, Length=96, Percent_Identity=41.6666666666667, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI24658562, Length=350, Percent_Identity=31.4285714285714, Blast_Score=133, Evalue=1e-31, Organism=Drosophila melanogaster, GI24658555, Length=350, Percent_Identity=31.4285714285714, Blast_Score=133, Evalue=1e-31, Organism=Drosophila melanogaster, GI85726398, Length=350, Percent_Identity=30.5714285714286, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI19920464, Length=326, Percent_Identity=29.4478527607362, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI18858081, Length=354, Percent_Identity=27.4011299435028, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI45549272, Length=67, Percent_Identity=61.1940298507463, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI45552813, Length=67, Percent_Identity=61.1940298507463, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI45552811, Length=67, Percent_Identity=61.1940298507463, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24654066, Length=69, Percent_Identity=57.9710144927536, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24654070, Length=69, Percent_Identity=57.9710144927536, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24654068, Length=69, Percent_Identity=57.9710144927536, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24654072, Length=69, Percent_Identity=57.9710144927536, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI17737735, Length=64, Percent_Identity=59.375, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI28574723, Length=64, Percent_Identity=59.375, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24668523, Length=64, Percent_Identity=59.375, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24668492, Length=74, Percent_Identity=48.6486486486487, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI161077138, Length=65, Percent_Identity=56.9230769230769, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24646562, Length=66, Percent_Identity=59.0909090909091, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24646560, Length=66, Percent_Identity=59.0909090909091, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24646558, Length=66, Percent_Identity=59.0909090909091, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24646556, Length=66, Percent_Identity=59.0909090909091, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI21357547, Length=66, Percent_Identity=59.0909090909091, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI21355911, Length=104, Percent_Identity=47.1153846153846, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI20129487, Length=90, Percent_Identity=47.7777777777778, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24584014, Length=90, Percent_Identity=47.7777777777778, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI28574949, Length=139, Percent_Identity=31.6546762589928, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24641698, Length=63, Percent_Identity=49.2063492063492, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24641696, Length=63, Percent_Identity=49.2063492063492, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24651436, Length=65, Percent_Identity=44.6153846153846, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21358311, Length=65, Percent_Identity=44.6153846153846, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24762799, Length=107, Percent_Identity=38.3177570093458, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI21358273, Length=66, Percent_Identity=51.5151515151515, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24651439, Length=65, Percent_Identity=44.6153846153846, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]
EC number: NA
Molecular weight: Translated: 35036; Mature: 34905
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYIDYYKILGVDKSASQDDIKKAFRKLARKYHPDLNPNDPSAKDKFQEINEANEVLSDP CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCH EKRKKYDEYGEHWKHADEFEAQKKARQQAGGFGGAGGFGGFGGGGQGFSDGDGTYWYSSD HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC GGKGFSGGNAGGFSDFFESMFGHRGRGQSSAGFRGQDFNAELHLSLRDAAQTHKQILTVN CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHEEEEEC GKQVRITIPAGVADGQVIKLKGYGAEGVNGGPAGDLYITFVIAEDPVFKRLGDDLYVDVE CCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHCCCCEEEEEE VDLYTAVLGGDKVVDTLDGKVKLKIKPETQNGTKVRLKGKGFPVYKKEGQFGDLIVTYSV EEEEEEEECCCCEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEECCCCCCCEEEEEEE KIPTNLTEAQKELFRQLQSMN ECCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure AYIDYYKILGVDKSASQDDIKKAFRKLARKYHPDLNPNDPSAKDKFQEINEANEVLSDP CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCH EKRKKYDEYGEHWKHADEFEAQKKARQQAGGFGGAGGFGGFGGGGQGFSDGDGTYWYSSD HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC GGKGFSGGNAGGFSDFFESMFGHRGRGQSSAGFRGQDFNAELHLSLRDAAQTHKQILTVN CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHEEEEEC GKQVRITIPAGVADGQVIKLKGYGAEGVNGGPAGDLYITFVIAEDPVFKRLGDDLYVDVE CCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHCCCCEEEEEE VDLYTAVLGGDKVVDTLDGKVKLKIKPETQNGTKVRLKGKGFPVYKKEGQFGDLIVTYSV EEEEEEEECCCCEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEECCCCCCCEEEEEEE KIPTNLTEAQKELFRQLQSMN ECCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA