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The map label for this gene is ompA [C]

Identifier: 29346911

GI number: 29346911

Start: 1850513

End: 1851604

Strand: Reverse

Name: ompA [C]

Synonym: BT_1501

Alternate gene names: 29346911

Gene position: 1851604-1850513 (Counterclockwise)

Preceding gene: 29346912

Following gene: 29346908

Centisome position: 29.58

GC content: 44.41

Gene sequence:

>1092_bases
ATGAGCATTAGAAGAAAACTGTTGATAGGTATAATGGCTATCAGTGTATTGCCAATTTCCGCCCAGGAACAGCGTATCAA
GGAACCTGAAAAGATTTCTTTCAAACCTCATTGGTTCATTCAAGCACAAATAGGAGCAGCCCATACCGTAGGTGAAGCAA
AATTCACTGATCTTATTTCTCCGGCAGCAGCTCTTAATGTCGGTTATAAGTTTGCTCCCGCATTCGGCGCACGTGTTGGT
GTAAGTGGCTGGCAGGCAAAGGGGGGATGGGTGAATCCGCAACAGACCTACCAATATAAATATCTGCAAGGAAATGTAGA
CATCATGGCGGATCTCAGTACTTTGTTCTGTGGTTTCAATCCGAAGCGTGTGTTCAATGGCTATCTTTTTGCCGGAGCAG
GGCTGAACCGTGGTTTTGACAACGATGAAGCAAATGCGCTCGATACCCGTACTTATGAGATGGAATATCTCTGGCAGGAA
GGTAAGTTTCTCGTTGCCGGACGTTTCGGTCTTGGTTGCGACCTTCGTTTGAATGACCGCTTGTCTATTAACATCGAAGC
GAATGCCAACGCCTTGTCTGATAAGTTCAACTCCAAGAAGGCCGGTAACTGTGACTGGCAACTGAATGCCCTTGTCGGTG
TAAGTATCAGACTGGGTAAAAGCTACACTAAAACCGCTCCGGTCTATTACGAACCGGAACCGGTAGTGACGGAACAACCC
AAACCGGCTCCTGTAGTAGAACAACCGCAACCCAAAAAGGAAGTGGTGATTGAACCGTTGAAGCAGAATATTTTCTTTGC
CATAAACTCTGCAAAGATTCAGGACGATCAGCAAGCCAAGATTGCTTCTCTAGTAGAATATTTAGAGAAGAATGCTACTG
CTAAAGTGAGCGTGACAGGATATGCAGACAAAGGAACTGGTAATGCCAGAATCAACAGCAAATTATCGGAAAAACGTGCG
AATAATGTAGTGGAAGCTTTGAAAGCAAAAGGTATTGCTGCCGATAGAATTACAGTTGCTTATAAAGGTGATACTGTTCA
GCCATATAATACTCCTGAAGAAAATCGGGTAAGTATCTGTATTGCTGAGTAA

Upstream 100 bases:

>100_bases
TTGAAAAGACATTAGGTAACTAATTCTTTTTGAACTTAAATATAATGAAGCGCTTCTCTCTAATGAGAGGCGCTTTATGT
TTAATGTAAATTAATCAATT

Downstream 100 bases:

>100_bases
ATATGGCACACAAAGGCTATTAAGAATTTAAAATTTCCCTATTTCTCATGAGAGAGTTTTCCCCACTTCTTTATATATAT
CATTTATATAAGGTGTTCTC

Product: major outer membrane protein OmpA

Products: NA

Alternate protein names: Omp40; PG33 [H]

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSIRRKLLIGIMAISVLPISAQEQRIKEPEKISFKPHWFIQAQIGAAHTVGEAKFTDLISPAAALNVGYKFAPAFGARVG
VSGWQAKGGWVNPQQTYQYKYLQGNVDIMADLSTLFCGFNPKRVFNGYLFAGAGLNRGFDNDEANALDTRTYEMEYLWQE
GKFLVAGRFGLGCDLRLNDRLSINIEANANALSDKFNSKKAGNCDWQLNALVGVSIRLGKSYTKTAPVYYEPEPVVTEQP
KPAPVVEQPQPKKEVVIEPLKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTGYADKGTGNARINSKLSEKRA
NNVVEALKAKGIAADRITVAYKGDTVQPYNTPEENRVSICIAE

Sequences:

>Translated_363_residues
MSIRRKLLIGIMAISVLPISAQEQRIKEPEKISFKPHWFIQAQIGAAHTVGEAKFTDLISPAAALNVGYKFAPAFGARVG
VSGWQAKGGWVNPQQTYQYKYLQGNVDIMADLSTLFCGFNPKRVFNGYLFAGAGLNRGFDNDEANALDTRTYEMEYLWQE
GKFLVAGRFGLGCDLRLNDRLSINIEANANALSDKFNSKKAGNCDWQLNALVGVSIRLGKSYTKTAPVYYEPEPVVTEQP
KPAPVVEQPQPKKEVVIEPLKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTGYADKGTGNARINSKLSEKRA
NNVVEALKAKGIAADRITVAYKGDTVQPYNTPEENRVSICIAE
>Mature_362_residues
SIRRKLLIGIMAISVLPISAQEQRIKEPEKISFKPHWFIQAQIGAAHTVGEAKFTDLISPAAALNVGYKFAPAFGARVGV
SGWQAKGGWVNPQQTYQYKYLQGNVDIMADLSTLFCGFNPKRVFNGYLFAGAGLNRGFDNDEANALDTRTYEMEYLWQEG
KFLVAGRFGLGCDLRLNDRLSINIEANANALSDKFNSKKAGNCDWQLNALVGVSIRLGKSYTKTAPVYYEPEPVVTEQPK
PAPVVEQPQPKKEVVIEPLKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTGYADKGTGNARINSKLSEKRAN
NVVEALKAKGIAADRITVAYKGDTVQPYNTPEENRVSICIAE

Specific function: May have porin activity and function in peptidoglycan binding [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 39975; Mature: 39844

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRRKLLIGIMAISVLPISAQEQRIKEPEKISFKPHWFIQAQIGAAHTVGEAKFTDLIS
CCHHHHHHHHHHHHHEECCCCHHHHCCCCCCCCCCCEEEEEEECCCEEECCCHHHHHHHC
PAAALNVGYKFAPAFGARVGVSGWQAKGGWVNPQQTYQYKYLQGNVDIMADLSTLFCGFN
CHHHHHCCEEECCCCCCEECCCCCCCCCCCCCCHHCEEEEEEECCEEEEEEHHHHHCCCC
PKRVFNGYLFAGAGLNRGFDNDEANALDTRTYEMEYLWQEGKFLVAGRFGLGCDLRLNDR
HHHHHCCEEEECCCCCCCCCCCCCCCEECEEEEEEEEECCCCEEEEECCCCCEEEEECCE
LSINIEANANALSDKFNSKKAGNCDWQLNALVGVSIRLGKSYTKTAPVYYEPEPVVTEQP
EEEEEECCCCHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEECCCCCCCCCC
KPAPVVEQPQPKKEVVIEPLKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTG
CCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
YADKGTGNARINSKLSEKRANNVVEALKAKGIAADRITVAYKGDTVQPYNTPEENRVSIC
ECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEECEEEEEEECCCCCCCCCCCCCEEEEE
IAE
EEC
>Mature Secondary Structure 
SIRRKLLIGIMAISVLPISAQEQRIKEPEKISFKPHWFIQAQIGAAHTVGEAKFTDLIS
CHHHHHHHHHHHHHEECCCCHHHHCCCCCCCCCCCEEEEEEECCCEEECCCHHHHHHHC
PAAALNVGYKFAPAFGARVGVSGWQAKGGWVNPQQTYQYKYLQGNVDIMADLSTLFCGFN
CHHHHHCCEEECCCCCCEECCCCCCCCCCCCCCHHCEEEEEEECCEEEEEEHHHHHCCCC
PKRVFNGYLFAGAGLNRGFDNDEANALDTRTYEMEYLWQEGKFLVAGRFGLGCDLRLNDR
HHHHHCCEEEECCCCCCCCCCCCCCCEECEEEEEEEEECCCCEEEEECCCCCEEEEECCE
LSINIEANANALSDKFNSKKAGNCDWQLNALVGVSIRLGKSYTKTAPVYYEPEPVVTEQP
EEEEEECCCCHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEECCCCCCCCCC
KPAPVVEQPQPKKEVVIEPLKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTG
CCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
YADKGTGNARINSKLSEKRANNVVEALKAKGIAADRITVAYKGDTVQPYNTPEENRVSIC
ECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEECEEEEEEECCCCCCCCCCCCCEEEEE
IAE
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11457538; 12949112; 11532011 [H]