| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29346870
Identifier: 29346870
GI number: 29346870
Start: 1797773
End: 1800250
Strand: Reverse
Name: 29346870
Synonym: BT_1460
Alternate gene names: NA
Gene position: 1800250-1797773 (Counterclockwise)
Preceding gene: 29346873
Following gene: 29346869
Centisome position: 28.76
GC content: 47.66
Gene sequence:
>2478_bases ATGAAGATGAATAAAACTATGTTGTTAGGGGAAGTAGCAAACCGTTCGGGGATTCCGGCAGATGAATGCGGAGTAGTACT TAAAACTTTTGAAAGAGTCCTTTGCGAAGAACTCACACGGAAACTGTATCGTTATGGAGGATGGATATTGCTGTTGATCG GTTTGTTTGTATCAGCTTTTGCTTTCGGGCAAACATCGGAGCGGAAAGGGCGTCCGGTCCAGACCATTCGTGGGATGGTT GTTGACGGAGATTCCAAATATCCTATACCGTATGCGACAATTAGATTGTCAGATAAAGAGGGGATGGGGACGACAACCGA CAGTTTGGGACGTTTCACCATTCCGCAGGTTCCCGTCGGGAGACATACGGTAGAGGCAGCGTTCATGGGATATGAACCCG GCATTTTCAGAGAAATACTGGTGACTTCCGCCAAAGAAGTCTATTTGGAAATACCTTTGAAAGAAAGCGTCAACGAACTG AGTGAAGTAGTGGTCCGTGCGCGGACGAACAAAGAAGAAGCGATGAATAAGATGGCAACTACCGGAGCACGTATGCTGAG CGTGGAGGAAGCGAGCCGTTATGCAGGCGGATTCGACGACCCTGCACGTCTGGTATCCGCTTTTGCCGGAGTGGCGCCCA GCGTCTCTTCGAATGGAATTTCGATTCATGGCAATGCACCCCATCTGTTGCAATGGAGGCTGGAGGATGTAGAAATCCCG AATCCGAATCACTTTGCGGATATTGCCACATTGGGTGGAGGAATCCTTTCTTCCCTTAGCTCACAGGTACTCGGAAATTC CGATTTCTTCACCGGAGCTTTTCCGGCTGAATATGGAAATGCAGTGTCCGGCGTGTTCGACATGAAGCTGCGCAACGGTA ACAATCAAAAGAACGAAAACACGATTCAAGTGGGAATCATGGGAATTGACGTTGCTTCCGAAGGTCCTTTGAGCAAGAAG CATAAAGCCTCGTATATCTTCAATTATCGTTACTCTACCACAGGACTACTGAATCTTGACGGCGGAACGATGGACTATCA GGACCTGAACTTCAAACTAAACTTTCCCACAAAGATGGCCGGGACTTTCTCGGTATGGGGAACCAGTCTGATAGACAAAT TTAAGAGTGACATGGAGAGGAACCCTGAGAAATGGGAATATCTGGGCGACCGCAGCGAATCACGTGACAAGCAGTATATG GCCGCCGGAGGTATCAGTCACCGTTACTTTTTCAATAGTGACGCATCGCTGAAAACAACCGTTGCCGCTACCTACTCGCA GTTGGACGGAGGCGCTTCCATGTTCAATCATGCGTTGGAATCGACTCCTTATATGGACCTTGAATCAAGGCATACCAACC TGATACTGACCAGCACCTTCAACCGTAAATTCAGCAACCGCTTTACCAATAAGACAGGATTCACTTATACTGCCATGTTT TATGACATGAACCTTGCCATAGCTCCATACGAAGCTCAGCTGCTGGAAACGGTATCGAAGGGAGATGGCAATACGAGTCT GATTTCTGCTTACAATAGCTCTTCTGTCGGACTGAGTGACCGTTGGACTCTCAACGCCGGTATCTACGGACAATACCTGA CGCTGAATAATAAATGGTCTGTCGAACCCCGTGCCGGACTGAAATGGCAGGCTACCCCGAAAGCGACCTTTGCTTTAGCT TACGGCATATACAGCCGGATGGAGAAAATGGACGTCTACTTTGTGAAAACGAAGAGTACGGGAAATCAATCCGTCAACAA GAACCTCGACTTCACCAAGGCGCAGCACATCATGCTGTCTTTCGGCTATAAGATTTCGGACCGCATGAATCTGAAAATAG AACCATATGTACAGTTCCTGCACGATGTACCGGTAATGGCGGATAGTTCCTATTCCGTACTCAACCGCTCCGACTTTTAT GTAGAAGATGCGCTTGTCAACAAAGGAAGAGGCCGGAATATCGGGATTGACATAACCCTCGAACGCTTCCTGGAAAAAGG ACTTTATTACATGATCTCCGGTTCGTTGTTCGACTCCCGTTACCGTGGCGGAGACGGTGTATGGTACAACACGAAGTTCA ACCGCAACTATGTCATCAACGGACTGATCGGCAAAGAATGGATGCTGGGACGCAACAAACAGAATATTCTTAGCATCAAC CTGAAACTGACCTTGCAGGGCGGCGACCGCTATTCCCCGATTGATATGGAAGCAACCATGAAGCATCCGGACAAGGAAGT GCAGTACGACGAAAGGAAGGCATTCTCCAAACAGTATTCGCCCATGTTTATCGGCAATTATACCGTCAGCTATCGCATCA ACAAGAAAAAAGTATCTCACGAATTTGCTGTGAAGGGCTTGAACTTTATGGGCACGAAAGAGCACTACGGACATGAGTAT AACGTGAAAACCGGAAAGATAGACGCAACCGACGGCTCTACCGTTCTGACTAATGTGAGTTATAAGCTTGAATTTTAG
Upstream 100 bases:
>100_bases TTCCACATCTTGTCTACAAATGAGGCGTGTTCGTCTCATTTGAAAAACCGGCAATGCAGTATCCCTTATCTTCGTGTCGA AATAAAAAACAGAATAAGTC
Downstream 100 bases:
>100_bases ATATCCGGTATAGAGACCTTAACGGAAAATGTTTTATCTTCGTACCCGATGAAGCATATGGCAACTGAAACAACTGCAGC AGGCAACGAATCGGCCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Nb-Dependent Receptor Plug; Nb-Dependent Receptor; Ferric Aerobactin Receptor; Outer Membrane Protein; NB-Dependent Outer Membrane Receptor Protein; NB Dependent Outer Membrane Protein; NB-Dependent Receptor; NB Family Protein
Number of amino acids: Translated: 825; Mature: 825
Protein sequence:
>825_residues MKMNKTMLLGEVANRSGIPADECGVVLKTFERVLCEELTRKLYRYGGWILLLIGLFVSAFAFGQTSERKGRPVQTIRGMV VDGDSKYPIPYATIRLSDKEGMGTTTDSLGRFTIPQVPVGRHTVEAAFMGYEPGIFREILVTSAKEVYLEIPLKESVNEL SEVVVRARTNKEEAMNKMATTGARMLSVEEASRYAGGFDDPARLVSAFAGVAPSVSSNGISIHGNAPHLLQWRLEDVEIP NPNHFADIATLGGGILSSLSSQVLGNSDFFTGAFPAEYGNAVSGVFDMKLRNGNNQKNENTIQVGIMGIDVASEGPLSKK HKASYIFNYRYSTTGLLNLDGGTMDYQDLNFKLNFPTKMAGTFSVWGTSLIDKFKSDMERNPEKWEYLGDRSESRDKQYM AAGGISHRYFFNSDASLKTTVAATYSQLDGGASMFNHALESTPYMDLESRHTNLILTSTFNRKFSNRFTNKTGFTYTAMF YDMNLAIAPYEAQLLETVSKGDGNTSLISAYNSSSVGLSDRWTLNAGIYGQYLTLNNKWSVEPRAGLKWQATPKATFALA YGIYSRMEKMDVYFVKTKSTGNQSVNKNLDFTKAQHIMLSFGYKISDRMNLKIEPYVQFLHDVPVMADSSYSVLNRSDFY VEDALVNKGRGRNIGIDITLERFLEKGLYYMISGSLFDSRYRGGDGVWYNTKFNRNYVINGLIGKEWMLGRNKQNILSIN LKLTLQGGDRYSPIDMEATMKHPDKEVQYDERKAFSKQYSPMFIGNYTVSYRINKKKVSHEFAVKGLNFMGTKEHYGHEY NVKTGKIDATDGSTVLTNVSYKLEF
Sequences:
>Translated_825_residues MKMNKTMLLGEVANRSGIPADECGVVLKTFERVLCEELTRKLYRYGGWILLLIGLFVSAFAFGQTSERKGRPVQTIRGMV VDGDSKYPIPYATIRLSDKEGMGTTTDSLGRFTIPQVPVGRHTVEAAFMGYEPGIFREILVTSAKEVYLEIPLKESVNEL SEVVVRARTNKEEAMNKMATTGARMLSVEEASRYAGGFDDPARLVSAFAGVAPSVSSNGISIHGNAPHLLQWRLEDVEIP NPNHFADIATLGGGILSSLSSQVLGNSDFFTGAFPAEYGNAVSGVFDMKLRNGNNQKNENTIQVGIMGIDVASEGPLSKK HKASYIFNYRYSTTGLLNLDGGTMDYQDLNFKLNFPTKMAGTFSVWGTSLIDKFKSDMERNPEKWEYLGDRSESRDKQYM AAGGISHRYFFNSDASLKTTVAATYSQLDGGASMFNHALESTPYMDLESRHTNLILTSTFNRKFSNRFTNKTGFTYTAMF YDMNLAIAPYEAQLLETVSKGDGNTSLISAYNSSSVGLSDRWTLNAGIYGQYLTLNNKWSVEPRAGLKWQATPKATFALA YGIYSRMEKMDVYFVKTKSTGNQSVNKNLDFTKAQHIMLSFGYKISDRMNLKIEPYVQFLHDVPVMADSSYSVLNRSDFY VEDALVNKGRGRNIGIDITLERFLEKGLYYMISGSLFDSRYRGGDGVWYNTKFNRNYVINGLIGKEWMLGRNKQNILSIN LKLTLQGGDRYSPIDMEATMKHPDKEVQYDERKAFSKQYSPMFIGNYTVSYRINKKKVSHEFAVKGLNFMGTKEHYGHEY NVKTGKIDATDGSTVLTNVSYKLEF >Mature_825_residues MKMNKTMLLGEVANRSGIPADECGVVLKTFERVLCEELTRKLYRYGGWILLLIGLFVSAFAFGQTSERKGRPVQTIRGMV VDGDSKYPIPYATIRLSDKEGMGTTTDSLGRFTIPQVPVGRHTVEAAFMGYEPGIFREILVTSAKEVYLEIPLKESVNEL SEVVVRARTNKEEAMNKMATTGARMLSVEEASRYAGGFDDPARLVSAFAGVAPSVSSNGISIHGNAPHLLQWRLEDVEIP NPNHFADIATLGGGILSSLSSQVLGNSDFFTGAFPAEYGNAVSGVFDMKLRNGNNQKNENTIQVGIMGIDVASEGPLSKK HKASYIFNYRYSTTGLLNLDGGTMDYQDLNFKLNFPTKMAGTFSVWGTSLIDKFKSDMERNPEKWEYLGDRSESRDKQYM AAGGISHRYFFNSDASLKTTVAATYSQLDGGASMFNHALESTPYMDLESRHTNLILTSTFNRKFSNRFTNKTGFTYTAMF YDMNLAIAPYEAQLLETVSKGDGNTSLISAYNSSSVGLSDRWTLNAGIYGQYLTLNNKWSVEPRAGLKWQATPKATFALA YGIYSRMEKMDVYFVKTKSTGNQSVNKNLDFTKAQHIMLSFGYKISDRMNLKIEPYVQFLHDVPVMADSSYSVLNRSDFY VEDALVNKGRGRNIGIDITLERFLEKGLYYMISGSLFDSRYRGGDGVWYNTKFNRNYVINGLIGKEWMLGRNKQNILSIN LKLTLQGGDRYSPIDMEATMKHPDKEVQYDERKAFSKQYSPMFIGNYTVSYRINKKKVSHEFAVKGLNFMGTKEHYGHEY NVKTGKIDATDGSTVLTNVSYKLEF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92401; Mature: 92401
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMNKTMLLGEVANRSGIPADECGVVLKTFERVLCEELTRKLYRYGGWILLLIGLFVSAF CCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AFGQTSERKGRPVQTIRGMVVDGDSKYPIPYATIRLSDKEGMGTTTDSLGRFTIPQVPVG HCCCCCCCCCCCHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCC RHTVEAAFMGYEPGIFREILVTSAKEVYLEIPLKESVNELSEVVVRARTNKEEAMNKMAT CCEEEEEEECCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHH TGARMLSVEEASRYAGGFDDPARLVSAFAGVAPSVSSNGISIHGNAPHLLQWRLEDVEIP CCHHEEEHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCCC NPNHFADIATLGGGILSSLSSQVLGNSDFFTGAFPAEYGNAVSGVFDMKLRNGNNQKNEN CCCCHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCC TIQVGIMGIDVASEGPLSKKHKASYIFNYRYSTTGLLNLDGGTMDYQDLNFKLNFPTKMA EEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEEECCCCEECCEECEEEECCCCCCC GTFSVWGTSLIDKFKSDMERNPEKWEYLGDRSESRDKQYMAAGGISHRYFFNSDASLKTT CCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHCCCCEEEEECCCCCCEEE VAATYSQLDGGASMFNHALESTPYMDLESRHTNLILTSTFNRKFSNRFTNKTGFTYTAMF HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCEEEEEE YDMNLAIAPYEAQLLETVSKGDGNTSLISAYNSSSVGLSDRWTLNAGIYGQYLTLNNKWS EEEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEECCCEEEEEEECCEEC VEPRAGLKWQATPKATFALAYGIYSRMEKMDVYFVKTKSTGNQSVNKNLDFTKAQHIMLS CCCCCCCEEECCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCHHHHHEEEEE FGYKISDRMNLKIEPYVQFLHDVPVMADSSYSVLNRSDFYVEDALVNKGRGRNIGIDITL ECCEECCCCCEEEHHHHHHHHCCCEEECCCCCCCCCCCCEEEHHHHCCCCCCEEEEEEEH ERFLEKGLYYMISGSLFDSRYRGGDGVWYNTKFNRNYVINGLIGKEWMLGRNKQNILSIN HHHHHCCCEEEEECCEECCCCCCCCCEEEEEEECCCEEEEEEECCHHHCCCCCCCEEEEE LKLTLQGGDRYSPIDMEATMKHPDKEVQYDERKAFSKQYSPMFIGNYTVSYRINKKKVSH EEEEECCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEECHHHHCH EFAVKGLNFMGTKEHYGHEYNVKTGKIDATDGSTVLTNVSYKLEF HHHHCCCCCCCCHHHCCCEEECEECEEECCCCCEEEEEEEEEEEC >Mature Secondary Structure MKMNKTMLLGEVANRSGIPADECGVVLKTFERVLCEELTRKLYRYGGWILLLIGLFVSAF CCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AFGQTSERKGRPVQTIRGMVVDGDSKYPIPYATIRLSDKEGMGTTTDSLGRFTIPQVPVG HCCCCCCCCCCCHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCC RHTVEAAFMGYEPGIFREILVTSAKEVYLEIPLKESVNELSEVVVRARTNKEEAMNKMAT CCEEEEEEECCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHH TGARMLSVEEASRYAGGFDDPARLVSAFAGVAPSVSSNGISIHGNAPHLLQWRLEDVEIP CCHHEEEHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCCC NPNHFADIATLGGGILSSLSSQVLGNSDFFTGAFPAEYGNAVSGVFDMKLRNGNNQKNEN CCCCHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCC TIQVGIMGIDVASEGPLSKKHKASYIFNYRYSTTGLLNLDGGTMDYQDLNFKLNFPTKMA EEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEEECCCCEECCEECEEEECCCCCCC GTFSVWGTSLIDKFKSDMERNPEKWEYLGDRSESRDKQYMAAGGISHRYFFNSDASLKTT CCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHCCCCEEEEECCCCCCEEE VAATYSQLDGGASMFNHALESTPYMDLESRHTNLILTSTFNRKFSNRFTNKTGFTYTAMF HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCEEEEEE YDMNLAIAPYEAQLLETVSKGDGNTSLISAYNSSSVGLSDRWTLNAGIYGQYLTLNNKWS EEEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEECCCEEEEEEECCEEC VEPRAGLKWQATPKATFALAYGIYSRMEKMDVYFVKTKSTGNQSVNKNLDFTKAQHIMLS CCCCCCCEEECCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCHHHHHEEEEE FGYKISDRMNLKIEPYVQFLHDVPVMADSSYSVLNRSDFYVEDALVNKGRGRNIGIDITL ECCEECCCCCEEEHHHHHHHHCCCEEECCCCCCCCCCCCEEEHHHHCCCCCCEEEEEEEH ERFLEKGLYYMISGSLFDSRYRGGDGVWYNTKFNRNYVINGLIGKEWMLGRNKQNILSIN HHHHHCCCEEEEECCEECCCCCCCCCEEEEEEECCCEEEEEEECCHHHCCCCCCCEEEEE LKLTLQGGDRYSPIDMEATMKHPDKEVQYDERKAFSKQYSPMFIGNYTVSYRINKKKVSH EEEEECCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEECHHHHCH EFAVKGLNFMGTKEHYGHEYNVKTGKIDATDGSTVLTNVSYKLEF HHHHCCCCCCCCHHHCCCEEECEECEEECCCCCEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA