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The map label for this gene is yjgF [C]

Identifier: 29346746

GI number: 29346746

Start: 1661772

End: 1662146

Strand: Reverse

Name: yjgF [C]

Synonym: BT_1336

Alternate gene names: 29346746

Gene position: 1662146-1661772 (Counterclockwise)

Preceding gene: 29346747

Following gene: 29346744

Centisome position: 26.55

GC content: 46.93

Gene sequence:

>375_bases
ATGAAAAAAGTAATTTGCAGTGAAAAAGCACCGGGAGCTATCGGTCCTTATAGTCAGGCGATAGAAGCCAATGGAATGGT
ATTCGTATCGGGTCAGTTGCCTATCGATGCGGCTACCGGAAAGATGGCGGAAGGAATTGAAGAACAGGCACGCCAGTCGT
TGGAGAATATAAAACACATCCTGGAAGAAACAGGGCTGACAATGGGAAACATTGTAAAAACGACTGTATTCCTTCAGGAT
ATGTCTTTCTTTGCCGGAATGAACGGCGTATATGCTACGTATTTTGACGGAGCTTTTCCGGCACGTTCGGCTGTGGCCGT
AAAGGCTTTGCCGAAGGATGCGTTAGTGGAGATTGAGTGTATCGCGGTTCGCTAA

Upstream 100 bases:

>100_bases
TAATAAGCAGAAATATGGTTGCCTCTTGCAAAATTCGTTTTGCGAGAGGCATTTTTTTACTACCTTTGAGGATTGGTAAA
CAGAAAAAAAGAAGATAAAT

Downstream 100 bases:

>100_bases
CAAATCGGCGACAATAAAACTGCTGCCTCCCACGAAGATGAAGTCTTTAGGGGGGCAGTTTTCTTTTGCTGCCCGTACGG
CATCCACTACGGTAGGGTAG

Product: putative translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MKKVICSEKAPGAIGPYSQAIEANGMVFVSGQLPIDAATGKMAEGIEEQARQSLENIKHILEETGLTMGNIVKTTVFLQD
MSFFAGMNGVYATYFDGAFPARSAVAVKALPKDALVEIECIAVR

Sequences:

>Translated_124_residues
MKKVICSEKAPGAIGPYSQAIEANGMVFVSGQLPIDAATGKMAEGIEEQARQSLENIKHILEETGLTMGNIVKTTVFLQD
MSFFAGMNGVYATYFDGAFPARSAVAVKALPKDALVEIECIAVR
>Mature_124_residues
MKKVICSEKAPGAIGPYSQAIEANGMVFVSGQLPIDAATGKMAEGIEEQARQSLENIKHILEETGLTMGNIVKTTVFLQD
MSFFAGMNGVYATYFDGAFPARSAVAVKALPKDALVEIECIAVR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=44, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=49.6062992125984, Blast_Score=132, Evalue=5e-33,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=49.6062992125984, Blast_Score=132, Evalue=9e-33,
Organism=Escherichia coli, GI1787245, Length=122, Percent_Identity=33.6065573770492, Blast_Score=75, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=50, Blast_Score=132, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=50, Blast_Score=132, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=50, Blast_Score=132, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=44.5378151260504, Blast_Score=104, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=42.7184466019417, Blast_Score=89, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=42.741935483871, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13229; Mature: 13229

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVICSEKAPGAIGPYSQAIEANGMVFVSGQLPIDAATGKMAEGIEEQARQSLENIKHI
CCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LEETGLTMGNIVKTTVFLQDMSFFAGMNGVYATYFDGAFPARSAVAVKALPKDALVEIEC
HHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEE
IAVR
EEEC
>Mature Secondary Structure
MKKVICSEKAPGAIGPYSQAIEANGMVFVSGQLPIDAATGKMAEGIEEQARQSLENIKHI
CCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LEETGLTMGNIVKTTVFLQDMSFFAGMNGVYATYFDGAFPARSAVAVKALPKDALVEIEC
HHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEE
IAVR
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]