| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29346375
Identifier: 29346375
GI number: 29346375
Start: 1182131
End: 1183105
Strand: Reverse
Name: 29346375
Synonym: BT_0965
Alternate gene names: NA
Gene position: 1183105-1182131 (Counterclockwise)
Preceding gene: 29346376
Following gene: 29346374
Centisome position: 18.9
GC content: 39.79
Gene sequence:
>975_bases ATGGAAAAGAGTAATATTATCACCAGAATCATCAAAAAGTTCCTTTCCGGACGTTTTTCTGTTGAAACGGAGGAAAAGGT ACAGCGATGGATTATGAAGGAAGAAAACGCGGAGGAGAAAGAAAAAGCCTCATTAGAGTATTGGAACGAACTGGATACGG AAGCCGATTCAAAAACATACAGTGCTTTAGAGCGGGTCAATTTAAGAACCGGATACAACAAAGAACATCTTGAAAATATT GTTTTATATCATAAGTTTGTCCGCATTGTAGCCGTCGTTATTCCCATATGCTTATTGGCAGGAGGATTGCTTTATTATAT CCCTTCCGAAAACGAGCAGATAGAAATATCCACAGCCTATGGCGAACAAAAGCGCTTGGTTCTGCCGGATAGTTCCGAAG TATGGCTGAACGCTGGAAGTACAATTACCTATCCGAAAACTTTTACCAAAGAGAATCGTGTCGTAACCCTTGATGGTGAA GCCTATTTCTCAGTCAGAAAAGATGATGCAAAACCTTTCATAGTAGAAACATCGCAACTATCCGTCAAGGTACTTGGAAC GAAGTTCAATGTAAAGGCATATGCTAATGATGCGAATATTACCACAACGTTGACTAGTGGAAAAGTGGAAGTGAGTACGC AATCCCGTCCTCCTCAAACTCTCAAGCCCAACGAACAACTCACCTATGATAAATCGACATCAGATATTGAGATATCGACA GTAGACACTGTTGACACGAACAGTTGGGTAAAAGGGAAAATAATCTTCACCAATGCTACTGCCGAAGAAATATTCAGAAC GCTGGAACGACGTTATGATACTGTTATCGATCATTCTACCGATTTTTCTGCCTCTAGACGGTACACTGTCAAATTCCTGA AAGATGAGAATCTGGATGAAATGCTGAATATATTAGGAGATATAATCGGCTTTAGCTATCGGCAGAGTGGAAACAAAATA ATAATAACCAAATAA
Upstream 100 bases:
>100_bases GAAAGCTATCTCGTGCTTTTTATTATCTTTTTTATAAAAACATCCACTTTTTCATTGAGCTTTTTGTCATCAGACTGTAT ATATAGTAAATACAGCAAAA
Downstream 100 bases:
>100_bases AAAAAATAGCCTATGAACAAAAAGAACCGGGAAGCAGCTTGAGACCCTCTTCCCAGTTCTGAAATGTCTATCCTCATTTA AACCGCGAAGTAAAAACGAA
Product: putative anti-sigma factor
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MEKSNIITRIIKKFLSGRFSVETEEKVQRWIMKEENAEEKEKASLEYWNELDTEADSKTYSALERVNLRTGYNKEHLENI VLYHKFVRIVAVVIPICLLAGGLLYYIPSENEQIEISTAYGEQKRLVLPDSSEVWLNAGSTITYPKTFTKENRVVTLDGE AYFSVRKDDAKPFIVETSQLSVKVLGTKFNVKAYANDANITTTLTSGKVEVSTQSRPPQTLKPNEQLTYDKSTSDIEIST VDTVDTNSWVKGKIIFTNATAEEIFRTLERRYDTVIDHSTDFSASRRYTVKFLKDENLDEMLNILGDIIGFSYRQSGNKI IITK
Sequences:
>Translated_324_residues MEKSNIITRIIKKFLSGRFSVETEEKVQRWIMKEENAEEKEKASLEYWNELDTEADSKTYSALERVNLRTGYNKEHLENI VLYHKFVRIVAVVIPICLLAGGLLYYIPSENEQIEISTAYGEQKRLVLPDSSEVWLNAGSTITYPKTFTKENRVVTLDGE AYFSVRKDDAKPFIVETSQLSVKVLGTKFNVKAYANDANITTTLTSGKVEVSTQSRPPQTLKPNEQLTYDKSTSDIEIST VDTVDTNSWVKGKIIFTNATAEEIFRTLERRYDTVIDHSTDFSASRRYTVKFLKDENLDEMLNILGDIIGFSYRQSGNKI IITK >Mature_324_residues MEKSNIITRIIKKFLSGRFSVETEEKVQRWIMKEENAEEKEKASLEYWNELDTEADSKTYSALERVNLRTGYNKEHLENI VLYHKFVRIVAVVIPICLLAGGLLYYIPSENEQIEISTAYGEQKRLVLPDSSEVWLNAGSTITYPKTFTKENRVVTLDGE AYFSVRKDDAKPFIVETSQLSVKVLGTKFNVKAYANDANITTTLTSGKVEVSTQSRPPQTLKPNEQLTYDKSTSDIEIST VDTVDTNSWVKGKIIFTNATAEEIFRTLERRYDTVIDHSTDFSASRRYTVKFLKDENLDEMLNILGDIIGFSYRQSGNKI IITK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37037; Mature: 37037
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKSNIITRIIKKFLSGRFSVETEEKVQRWIMKEENAEEKEKASLEYWNELDTEADSKTY CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHH SALERVNLRTGYNKEHLENIVLYHKFVRIVAVVIPICLLAGGLLYYIPSENEQIEISTAY HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECC GEQKRLVLPDSSEVWLNAGSTITYPKTFTKENRVVTLDGEAYFSVRKDDAKPFIVETSQL CCCCEEECCCCCCEEEECCCEEECCCCCCCCCCEEEECCCEEEEEECCCCCCEEEEECCE SVKVLGTKFNVKAYANDANITTTLTSGKVEVSTQSRPPQTLKPNEQLTYDKSTSDIEIST EEEEEEEEEEEEEEECCCCEEEEEECCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEE VDTVDTNSWVKGKIIFTNATAEEIFRTLERRYDTVIDHSTDFSASRRYTVKFLKDENLDE EEEECCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHH MLNILGDIIGFSYRQSGNKIIITK HHHHHHHHHCCCEECCCCEEEEEC >Mature Secondary Structure MEKSNIITRIIKKFLSGRFSVETEEKVQRWIMKEENAEEKEKASLEYWNELDTEADSKTY CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHH SALERVNLRTGYNKEHLENIVLYHKFVRIVAVVIPICLLAGGLLYYIPSENEQIEISTAY HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECC GEQKRLVLPDSSEVWLNAGSTITYPKTFTKENRVVTLDGEAYFSVRKDDAKPFIVETSQL CCCCEEECCCCCCEEEECCCEEECCCCCCCCCCEEEECCCEEEEEECCCCCCEEEEECCE SVKVLGTKFNVKAYANDANITTTLTSGKVEVSTQSRPPQTLKPNEQLTYDKSTSDIEIST EEEEEEEEEEEEEEECCCCEEEEEECCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEE VDTVDTNSWVKGKIIFTNATAEEIFRTLERRYDTVIDHSTDFSASRRYTVKFLKDENLDE EEEECCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHH MLNILGDIIGFSYRQSGNKIIITK HHHHHHHHHCCCEECCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA