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The map label for this gene is rpoE [C]

Identifier: 29346376

GI number: 29346376

Start: 1183169

End: 1183720

Strand: Reverse

Name: rpoE [C]

Synonym: BT_0966

Alternate gene names: 29346376

Gene position: 1183720-1183169 (Counterclockwise)

Preceding gene: 29346377

Following gene: 29346375

Centisome position: 18.91

GC content: 35.87

Gene sequence:

>552_bases
ATGAGTAATAACATTGACATAAAAACGCTTGAAGCCTTCCAGGATGGAAATCACAAGGCTTTTGAAACAGTTTTTATAGC
CTATTACAATAAAACAAAGGCTTTCATCGACGGATATATAAAATCGGAATCGGATGCCGAAGAATTGACAGAAGACCTTT
TTGTCAACCTTTGGATCAATCATGATTCAATTGATGCATCCAAGTCTTTTAGTTCTTATCTGCATACAATTGCCCGTAAT
TCGGCCATAAATTTCTTGAAACATAAGTATGTACATGACACTTATCTAAATAGTAGTCAGGAGATCGAATATAGTTCTAC
CTCCGAAGAAGATCTTATTGCTAAAGAGTTAGGCTTATTAATAGATGACATTGTCGGAAAAATGTCGGAACAGCGGAAAA
TGATCTATACATTAAGCCGTCAGGAAGGGTTGAGCAATGCTGAGATAGCAATACAGCTCAACACCACTAAAAGAAATGTC
GAAAGTCAGTTAAGCCTCGCATTAAAGGAGATACGGAAAGCTATCTCGTGCTTTTTATTATCTTTTTTATAA

Upstream 100 bases:

>100_bases
AATTAGCAGGGATACATCTTAAATATTTTCAAAAGAATGCGTTTTTAAGCCAAATAATTACTTCTTTTGTCCTCACTAAT
AAAAATGAAAGTCGGACAAC

Downstream 100 bases:

>100_bases
AAACATCCACTTTTTCATTGAGCTTTTTGTCATCAGACTGTATATATAGTAAATACAGCAAAAATGGAAAAGAGTAATAT
TATCACCAGAATCATCAAAA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor; Sigma Factor; RNA Polymerase Sigma-W Factor; RNA Polymerase Sigma Factor RpoE; Sigma-70 Region 2 Subfamily; ECF-Type RNA Polymerase; Transcriptional Regulator LuxR Family; RNA Polymerase ECF Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MSNNIDIKTLEAFQDGNHKAFETVFIAYYNKTKAFIDGYIKSESDAEELTEDLFVNLWINHDSIDASKSFSSYLHTIARN
SAINFLKHKYVHDTYLNSSQEIEYSSTSEEDLIAKELGLLIDDIVGKMSEQRKMIYTLSRQEGLSNAEIAIQLNTTKRNV
ESQLSLALKEIRKAISCFLLSFL

Sequences:

>Translated_183_residues
MSNNIDIKTLEAFQDGNHKAFETVFIAYYNKTKAFIDGYIKSESDAEELTEDLFVNLWINHDSIDASKSFSSYLHTIARN
SAINFLKHKYVHDTYLNSSQEIEYSSTSEEDLIAKELGLLIDDIVGKMSEQRKMIYTLSRQEGLSNAEIAIQLNTTKRNV
ESQLSLALKEIRKAISCFLLSFL
>Mature_182_residues
SNNIDIKTLEAFQDGNHKAFETVFIAYYNKTKAFIDGYIKSESDAEELTEDLFVNLWINHDSIDASKSFSSYLHTIARNS
AINFLKHKYVHDTYLNSSQEIEYSSTSEEDLIAKELGLLIDDIVGKMSEQRKMIYTLSRQEGLSNAEIAIQLNTTKRNVE
SQLSLALKEIRKAISCFLLSFL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20907; Mature: 20776

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNIDIKTLEAFQDGNHKAFETVFIAYYNKTKAFIDGYIKSESDAEELTEDLFVNLWIN
CCCCCCCEEHHHHHCCCCHHHHEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHEEEEEEC
HDSIDASKSFSSYLHTIARNSAINFLKHKYVHDTYLNSSQEIEYSSTSEEDLIAKELGLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
IDDIVGKMSEQRKMIYTLSRQEGLSNAEIAIQLNTTKRNVESQLSLALKEIRKAISCFLL
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
SFL
HHC
>Mature Secondary Structure 
SNNIDIKTLEAFQDGNHKAFETVFIAYYNKTKAFIDGYIKSESDAEELTEDLFVNLWIN
CCCCCCEEHHHHHCCCCHHHHEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHEEEEEEC
HDSIDASKSFSSYLHTIARNSAINFLKHKYVHDTYLNSSQEIEYSSTSEEDLIAKELGLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
IDDIVGKMSEQRKMIYTLSRQEGLSNAEIAIQLNTTKRNVESQLSLALKEIRKAISCFLL
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
SFL
HHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA