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The map label for this gene is xerD [C]

Identifier: 29346363

GI number: 29346363

Start: 1162125

End: 1163114

Strand: Reverse

Name: xerD [C]

Synonym: BT_0953

Alternate gene names: 29346363

Gene position: 1163114-1162125 (Counterclockwise)

Preceding gene: 29346369

Following gene: 29346362

Centisome position: 18.58

GC content: 32.63

Gene sequence:

>990_bases
ATGTTAGAATTAAAATCAGATGACAGGGAGTATACCGCCAATATGCTTCTTCTCAATGATACAGATAAGACAGTTAAACA
TAAGACAGTTGGTGAGTTCTATCAGGATTTAATAAAACAATATGCAAATGAGAGTAAATGTGGCAATAGACTCATTTATA
AATCTTCATATAATTCTCTTTATACCTTCACTAAAGGTAATTTAGATATTCCATTCAGCGCAATTAACCCTTCATGGCTT
TGTAATTATGAGAAATGGTTACGTTCTAAAGGTAACAAAGAGACAACTATGAGTTTGATGTTACGTACTTTACGTAGTAC
ATATAATAAAGCTATTGAGAATAAATATGCACGTAAATCAGACTATCCATTCAATGAATACAAGATTGGTAAATTTGATG
TCAGCACAGAGAAGAGGGCTATAGCCAAAGCTGATATAATGAAGCTGACAGCCGATATATCTTCTGTTGGTAAGCGACAA
TACGTACAATTAAGTAAGGATATATTCATGTTTAGTTATTTATGTGGTGGAATCAATTTTACTGATATTGCCAATTTAAC
AAGTAAGAACATTGTTGACGGCAAAAGGTTACATTATATACGGCAGAAGACAGGTAAGCTTATTAAGTTGGGATTATCTG
ACGCAGCTTTAAGAATAATTGAACGGTATGCCCCTGATAGTCATGGATATTTATTTCCCATTCTAAATGTAGAGGTACAT
AAGACAGCATTGCAGAAACAGAATAGAATCCATAAGATATTAAGTAAGGTTAACAGTAATCTTAAATTAATAGCTACACA
ATCAGGACTTGATATTAACTTAACTACTTATGTAGCTCGTCACTCGTTTGCGACTGTATTGAAGAAATCAGGAGTAAATA
TTGCATTAATAAGTGAAGCGTTAGGACATTCTGATTTAGCAACAACACAAATATACCTTGATAGTTTCGATAACGAACAG
ATAGATGATGCAATGAAGAACTTATTATAG

Upstream 100 bases:

>100_bases
GTATTGGGACTTTACTAGAAATAGGCTTAAACCTAGTTGCCCAAATAGAGAATACATTCAAAAGATAATCCTCAATAAGC
AGGCAGAACTTCAGCAACGA

Downstream 100 bases:

>100_bases
TACCTTCAATTAATCCCACTTGTAATTATTGCAGGTGGGATTTTATTTATATATTTGCCCTATAAGGAGATAAAGCCATG
ATTAAAGTAACATACGAAGA

Product: integrase

Products: NA

Alternate protein names: Transposase; Tyrosine Type Site-Specific Recombinase; Tyrosine Site-Specific Recombinase; Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Protein; Site-Specific Recombinase; Site-Specific Recombinase IntIA; Bacteriophage Integrase; Integrase/Transposase; Integrase/Site-Specific Recombinase; Recombinase/Integrase; Phage Integrase; LOW QUALITY PROTEIN Tyrosine Recombinase

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLELKSDDREYTANMLLLNDTDKTVKHKTVGEFYQDLIKQYANESKCGNRLIYKSSYNSLYTFTKGNLDIPFSAINPSWL
CNYEKWLRSKGNKETTMSLMLRTLRSTYNKAIENKYARKSDYPFNEYKIGKFDVSTEKRAIAKADIMKLTADISSVGKRQ
YVQLSKDIFMFSYLCGGINFTDIANLTSKNIVDGKRLHYIRQKTGKLIKLGLSDAALRIIERYAPDSHGYLFPILNVEVH
KTALQKQNRIHKILSKVNSNLKLIATQSGLDINLTTYVARHSFATVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQ
IDDAMKNLL

Sequences:

>Translated_329_residues
MLELKSDDREYTANMLLLNDTDKTVKHKTVGEFYQDLIKQYANESKCGNRLIYKSSYNSLYTFTKGNLDIPFSAINPSWL
CNYEKWLRSKGNKETTMSLMLRTLRSTYNKAIENKYARKSDYPFNEYKIGKFDVSTEKRAIAKADIMKLTADISSVGKRQ
YVQLSKDIFMFSYLCGGINFTDIANLTSKNIVDGKRLHYIRQKTGKLIKLGLSDAALRIIERYAPDSHGYLFPILNVEVH
KTALQKQNRIHKILSKVNSNLKLIATQSGLDINLTTYVARHSFATVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQ
IDDAMKNLL
>Mature_329_residues
MLELKSDDREYTANMLLLNDTDKTVKHKTVGEFYQDLIKQYANESKCGNRLIYKSSYNSLYTFTKGNLDIPFSAINPSWL
CNYEKWLRSKGNKETTMSLMLRTLRSTYNKAIENKYARKSDYPFNEYKIGKFDVSTEKRAIAKADIMKLTADISSVGKRQ
YVQLSKDIFMFSYLCGGINFTDIANLTSKNIVDGKRLHYIRQKTGKLIKLGLSDAALRIIERYAPDSHGYLFPILNVEVH
KTALQKQNRIHKILSKVNSNLKLIATQSGLDINLTTYVARHSFATVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQ
IDDAMKNLL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37522; Mature: 37522

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELKSDDREYTANMLLLNDTDKTVKHKTVGEFYQDLIKQYANESKCGNRLIYKSSYNSL
CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCE
YTFTKGNLDIPFSAINPSWLCNYEKWLRSKGNKETTMSLMLRTLRSTYNKAIENKYARKS
EEEECCCCCCCEECCCCHHEECHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DYPFNEYKIGKFDVSTEKRAIAKADIMKLTADISSVGKRQYVQLSKDIFMFSYLCGGINF
CCCCCCEEECEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TDIANLTSKNIVDGKRLHYIRQKTGKLIKLGLSDAALRIIERYAPDSHGYLFPILNVEVH
HHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCEEEEEECCHHH
KTALQKQNRIHKILSKVNSNLKLIATQSGLDINLTTYVARHSFATVLKKSGVNIALISEA
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEHHH
LGHSDLATTQIYLDSFDNEQIDDAMKNLL
HCCCCHHHHEEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MLELKSDDREYTANMLLLNDTDKTVKHKTVGEFYQDLIKQYANESKCGNRLIYKSSYNSL
CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCE
YTFTKGNLDIPFSAINPSWLCNYEKWLRSKGNKETTMSLMLRTLRSTYNKAIENKYARKS
EEEECCCCCCCEECCCCHHEECHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DYPFNEYKIGKFDVSTEKRAIAKADIMKLTADISSVGKRQYVQLSKDIFMFSYLCGGINF
CCCCCCEEECEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TDIANLTSKNIVDGKRLHYIRQKTGKLIKLGLSDAALRIIERYAPDSHGYLFPILNVEVH
HHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCEEEEEECCHHH
KTALQKQNRIHKILSKVNSNLKLIATQSGLDINLTTYVARHSFATVLKKSGVNIALISEA
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEHHH
LGHSDLATTQIYLDSFDNEQIDDAMKNLL
HCCCCHHHHEEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA