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The map label for this gene is ihfA [H]

Identifier: 29346322

GI number: 29346322

Start: 1123751

End: 1124023

Strand: Reverse

Name: ihfA [H]

Synonym: BT_0912

Alternate gene names: 29346322

Gene position: 1124023-1123751 (Counterclockwise)

Preceding gene: 29346323

Following gene: 29346321

Centisome position: 17.95

GC content: 41.03

Gene sequence:

>273_bases
ATGAATAATAAGGAATTTACATCGGAACTGGCAGACAGACTGGGGTATACTATCAAAGACACTTCTGAACTGATAAGTTC
TTTATTGTCTGACATGACACAGGAACTGGAAGACGGGAATGCGATTGCAATACAGGGCTTTGGTTCTTTTGAAGTGAAGA
AAAAAGCGGAGCGCATTTCGATCAATCCGTCCACGAAGCAACGTATGCTGGTTCCTCCTAAATTGGTATTGACGTACAGA
CCCAGCAATACACTGAAAGACAAGTTTAAATAA

Upstream 100 bases:

>100_bases
ATCAGTGTTTCCAGAGAAGAACTTGAAGTCGGACAATTCTATCAGGTAGAAGTAACCGATGCGGACGATTTTGATTTATA
TGCAAAGATATTAAACAAGT

Downstream 100 bases:

>100_bases
TATATATTTCCCATTATGAATGAAAGACTGACAATTCAAGACCTTATCGACTTATTGGCGGCTAAACATAGCATGACCAA
GAAGGATGCCGAAGCATTCG

Product: DNA-binding protein HU

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MNNKEFTSELADRLGYTIKDTSELISSLLSDMTQELEDGNAIAIQGFGSFEVKKKAERISINPSTKQRMLVPPKLVLTYR
PSNTLKDKFK

Sequences:

>Translated_90_residues
MNNKEFTSELADRLGYTIKDTSELISSLLSDMTQELEDGNAIAIQGFGSFEVKKKAERISINPSTKQRMLVPPKLVLTYR
PSNTLKDKFK
>Mature_90_residues
MNNKEFTSELADRLGYTIKDTSELISSLLSDMTQELEDGNAIAIQGFGSFEVKKKAERISINPSTKQRMLVPPKLVLTYR
PSNTLKDKFK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=84, Percent_Identity=30.952380952381, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10168; Mature: 10168

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKEFTSELADRLGYTIKDTSELISSLLSDMTQELEDGNAIAIQGFGSFEVKKKAERIS
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHEEC
INPSTKQRMLVPPKLVLTYRPSNTLKDKFK
CCCCCCCEEECCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MNNKEFTSELADRLGYTIKDTSELISSLLSDMTQELEDGNAIAIQGFGSFEVKKKAERIS
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHEEC
INPSTKQRMLVPPKLVLTYRPSNTLKDKFK
CCCCCCCEEECCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA