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The map label for this gene is ihfA [C]

Identifier: 29346321

GI number: 29346321

Start: 1122272

End: 1123735

Strand: Reverse

Name: ihfA [C]

Synonym: BT_0911

Alternate gene names: 29346321

Gene position: 1123735-1122272 (Counterclockwise)

Preceding gene: 29346322

Following gene: 29346320

Centisome position: 17.95

GC content: 42.14

Gene sequence:

>1464_bases
ATGAATGAAAGACTGACAATTCAAGACCTTATCGACTTATTGGCGGCTAAACATAGCATGACCAAGAAGGATGCCGAAGC
ATTCGTCAAAGAGTTTTTTCTCTTGATAGAACAAGCCCTGGAGAATGAGAAGACTGTGAAAATCAAAGGATTGGGGACTT
TCAAACTTGTGGATGTAGATAGTCGGGAAAGCGTTAATGTCAACACAGGGGAACGTTTCCAGATAAAAGGTCATACCAAA
GTATCGTTTACTCCGGACACCAATCTGAGAGATACAATAAATAAGCCTTTTGCACATTTTGAAACGGTAGTATTAAATGA
AGGTACGGTATTGGAAGATACCCCTATGGAAGAATCCGATGAGGAGGAAGGTGCGGTTTCTGATACAGAGACTGAAATGA
TCGACTCTGAAATAGCAGGAAATGAAAATGCCGGTGGAGATATTCAGGAAGAAATACAACTGGAAGAACCTGTAATCGAA
GAGCAGCCGACTGCTGAAGCAGTAGCTGTGGCTGAAGTTCCTGAAACTGACGCGAATGAAACCGGTCAACCTGAAACAGA
ACCGGAACTAATTGCAACAGAAGAACCAGAAGCTGAAGAATTGCCGGAAGTGAAAATTGAACCGAAACCGGAATCTGTAT
CTGAGGAAGCCCCAGGAGAAGAGCCTGTAGAGGAATCTTCGGAAACTGTTTTGGAACCTGACTTCAGTCCGGTGACAGAG
GAACCTGCTAAGGAACAATCGGAAGAAACAATTATAGAAGAGCAGAAACCAGAGACTGAAACAACAGAAGAGGAGGAAGA
GAAAACGGTTATTACAGAAAAAGCGGAAGTTACTGCAGAGCAAATTATAGCCCAAGAGCTTCATAAAGCAAATATGGAGC
CTGTCACTCTCCAAGAACAGCCGGAAATAGAACAACCGAAAGCCACCTATACTGATAAAGACAGTGATAAAAAGGAAAAA
TCAGCTATTCCTTATTTAATAGCAACTATTATTATAGTCTTACTACTGTGCGGAGGAGCTATCCTGTTTATTTATTATCC
GGATTTGTTCTCATCTTCGTCTGATAAGAATGTGGTTGATATACCGGAAGTTACTCAACCTGTGCAGCCGGAAGCACAGC
TTTCAGATACAATTGCACACAAGGATACTGTGGTGGAAGCAGTCCAACCGCAACCTGTTGTCAAGAAGGAACCGACAGCG
GAACCTGTCAAAGCAGAAAGTAAACCTGCCCAACAACAACCAACAGCTTCGGCATATTCGGATTCCGCATCCTACAAGAT
AACCGGTACCAAAACAAAATACACAATTAAAGAAGGAGAGACTTTAACGAAAGTTTCATTACGCTTTTACGGTACAAAAG
CCATGTGGCCATATATCGTAAAACATAACCCGAAAGTAATCAAGAACCCCGATAACGTACCATACGGTACGACAATCGAG
ATACCGGAACTTACAAAAGAATAA

Upstream 100 bases:

>100_bases
GTCCACGAAGCAACGTATGCTGGTTCCTCCTAAATTGGTATTGACGTACAGACCCAGCAATACACTGAAAGACAAGTTTA
AATAATATATATTTCCCATT

Downstream 100 bases:

>100_bases
AAACAAAAAACACCTATTCACCCGGCTCATACAGCAATGTATAGCCGGGTGAAATGTTACGTAAGTACAAAAGCGTATGA
AAGTACCTTAATCTAAAGAT

Product: putative integration host factor IHF subunit alpha

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MNERLTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRESVNVNTGERFQIKGHTK
VSFTPDTNLRDTINKPFAHFETVVLNEGTVLEDTPMEESDEEEGAVSDTETEMIDSEIAGNENAGGDIQEEIQLEEPVIE
EQPTAEAVAVAEVPETDANETGQPETEPELIATEEPEAEELPEVKIEPKPESVSEEAPGEEPVEESSETVLEPDFSPVTE
EPAKEQSEETIIEEQKPETETTEEEEEKTVITEKAEVTAEQIIAQELHKANMEPVTLQEQPEIEQPKATYTDKDSDKKEK
SAIPYLIATIIIVLLLCGGAILFIYYPDLFSSSSDKNVVDIPEVTQPVQPEAQLSDTIAHKDTVVEAVQPQPVVKKEPTA
EPVKAESKPAQQQPTASAYSDSASYKITGTKTKYTIKEGETLTKVSLRFYGTKAMWPYIVKHNPKVIKNPDNVPYGTTIE
IPELTKE

Sequences:

>Translated_487_residues
MNERLTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRESVNVNTGERFQIKGHTK
VSFTPDTNLRDTINKPFAHFETVVLNEGTVLEDTPMEESDEEEGAVSDTETEMIDSEIAGNENAGGDIQEEIQLEEPVIE
EQPTAEAVAVAEVPETDANETGQPETEPELIATEEPEAEELPEVKIEPKPESVSEEAPGEEPVEESSETVLEPDFSPVTE
EPAKEQSEETIIEEQKPETETTEEEEEKTVITEKAEVTAEQIIAQELHKANMEPVTLQEQPEIEQPKATYTDKDSDKKEK
SAIPYLIATIIIVLLLCGGAILFIYYPDLFSSSSDKNVVDIPEVTQPVQPEAQLSDTIAHKDTVVEAVQPQPVVKKEPTA
EPVKAESKPAQQQPTASAYSDSASYKITGTKTKYTIKEGETLTKVSLRFYGTKAMWPYIVKHNPKVIKNPDNVPYGTTIE
IPELTKE
>Mature_487_residues
MNERLTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRESVNVNTGERFQIKGHTK
VSFTPDTNLRDTINKPFAHFETVVLNEGTVLEDTPMEESDEEEGAVSDTETEMIDSEIAGNENAGGDIQEEIQLEEPVIE
EQPTAEAVAVAEVPETDANETGQPETEPELIATEEPEAEELPEVKIEPKPESVSEEAPGEEPVEESSETVLEPDFSPVTE
EPAKEQSEETIIEEQKPETETTEEEEEKTVITEKAEVTAEQIIAQELHKANMEPVTLQEQPEIEQPKATYTDKDSDKKEK
SAIPYLIATIIIVLLLCGGAILFIYYPDLFSSSSDKNVVDIPEVTQPVQPEAQLSDTIAHKDTVVEAVQPQPVVKKEPTA
EPVKAESKPAQQQPTASAYSDSASYKITGTKTKYTIKEGETLTKVSLRFYGTKAMWPYIVKHNPKVIKNPDNVPYGTTIE
IPELTKE

Specific function: This Protein Is One Of The Two Subunits Of Integration Host Factor, A Specific DNA-Binding Protein That Functions In Genetic Recombination As Well As In Transcriptional And Translational Control. Ihf Also Plays A Crucial Role In The Lysogenic Life Cycle O

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54025; Mature: 54025

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERLTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVD
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECC
SRESVNVNTGERFQIKGHTKVSFTPDTNLRDTINKPFAHFETVVLNEGTVLEDTPMEESD
CCCCCCCCCCCEEEEECCEEEEECCCCCCHHHHCCCHHHHEEEEECCCEEECCCCCCCCC
EEEGAVSDTETEMIDSEIAGNENAGGDIQEEIQLEEPVIEEQPTAEAVAVAEVPETDANE
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC
TGQPETEPELIATEEPEAEELPEVKIEPKPESVSEEAPGEEPVEESSETVLEPDFSPVTE
CCCCCCCCCEEECCCCCHHHCCCCEECCCCCCCCCCCCCCCCHHHCCCCEECCCCCCCCC
EPAKEQSEETIIEEQKPETETTEEEEEKTVITEKAEVTAEQIIAQELHKANMEPVTLQEQ
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
PEIEQPKATYTDKDSDKKEKSAIPYLIATIIIVLLLCGGAILFIYYPDLFSSSSDKNVVD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCEEE
IPEVTQPVQPEAQLSDTIAHKDTVVEAVQPQPVVKKEPTAEPVKAESKPAQQQPTASAYS
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
DSASYKITGTKTKYTIKEGETLTKVSLRFYGTKAMWPYIVKHNPKVIKNPDNVPYGTTIE
CCCCEEEECCCEEEEECCCCEEEEEEEEEECCCCCCCEEEECCCCEEECCCCCCCCCEEE
IPELTKE
CCCCCCC
>Mature Secondary Structure
MNERLTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVD
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECC
SRESVNVNTGERFQIKGHTKVSFTPDTNLRDTINKPFAHFETVVLNEGTVLEDTPMEESD
CCCCCCCCCCCEEEEECCEEEEECCCCCCHHHHCCCHHHHEEEEECCCEEECCCCCCCCC
EEEGAVSDTETEMIDSEIAGNENAGGDIQEEIQLEEPVIEEQPTAEAVAVAEVPETDANE
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC
TGQPETEPELIATEEPEAEELPEVKIEPKPESVSEEAPGEEPVEESSETVLEPDFSPVTE
CCCCCCCCCEEECCCCCHHHCCCCEECCCCCCCCCCCCCCCCHHHCCCCEECCCCCCCCC
EPAKEQSEETIIEEQKPETETTEEEEEKTVITEKAEVTAEQIIAQELHKANMEPVTLQEQ
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
PEIEQPKATYTDKDSDKKEKSAIPYLIATIIIVLLLCGGAILFIYYPDLFSSSSDKNVVD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCEEE
IPEVTQPVQPEAQLSDTIAHKDTVVEAVQPQPVVKKEPTAEPVKAESKPAQQQPTASAYS
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
DSASYKITGTKTKYTIKEGETLTKVSLRFYGTKAMWPYIVKHNPKVIKNPDNVPYGTTIE
CCCCEEEECCCEEEEECCCCEEEEEEEEEECCCCCCCEEEECCCCEEECCCCCCCCCEEE
IPELTKE
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA