| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29346275
Identifier: 29346275
GI number: 29346275
Start: 1061861
End: 1063183
Strand: Reverse
Name: 29346275
Synonym: BT_0865
Alternate gene names: NA
Gene position: 1063183-1061861 (Counterclockwise)
Preceding gene: 29346276
Following gene: 29346266
Centisome position: 16.98
GC content: 43.84
Gene sequence:
>1323_bases ATGAGAAAAATAAGTTATATACTAATATCAGGCTGCATCACTCTATCTATTATCGGTTGTGATGAAACCTTTGATACGAG CAATACATCCGAAGGGATTTTGTCATTGTCTGAAAACGGACTGACTATTCTGCAATCGTATAATGTAGGAGAAAAATACA ATGCTGACTTATGGATACAACACGGAGGACTGGAACTGAATAACAGTACCGTCACCTTCACCGTAGACAAAAGCCTGCTC GACTCACTCAATACTGCCGACGGAACCAGTTACCAGATACTTCCGGAAGATTGTTATCAAATGACTAACACAACGGTTAA CGTATCTGCCGGTGACAGACTGGCAAAAGGCACTATCGTATACGACCCGACAAAGATTCATGCGTTGTGCGGCTATGACA ATGTTCAATACATTCTCCCACTCAAAGCAAGCACTACAGGAGAGAAGTTGAACCCCGGCCGTTCCACCCTCCTACTGGGA TTTAAAGTTTCCGAACCCATTGTAACTATCATAAACGATGGTATACAGGAAATCAATGTCAACAATGTAAAAGAGTTGCC GATTACCATTGGAGTACCTTTTAGCAATAAATGGAACATCAACTGTACATTAGTCAACAACCAGTCGGTAGTAGATACGT ACAACAGTGCCAATCAGACTTATTTCAGTCTTCTGCCGGCAGAGTGCTATACCAAACCCGAATCCCCGTCATTGTCTCAG GGAGTTGATCAGACCACAGTCAGTTACAAGCTGAAAGATAACATTCTTCCGGGAAATTATATGCTTCCTGTGCAAATAGG CGAAGTTACTTCCGATGCCACTATCCGTGCGGATAAAGACACCTACACAGGATTCTGCATCATAAAAGAAGGAACGAAAA TATCAAAGAGCGGCTGGGAAGTTCTGTCCTTTACGACACAGGAAGCTTCGGGAGAAGGAGCCGGCAATGGATTAGCCAAA TGTCTGATAGACGGAGACACTGAAACATTCTGGCATGCCAAATGGCAAGGTGGAAGCGACCCGCTACCGTATGATATTGT GATAGATATGAAGCAAAACATACAAATAGCACAGGTGGAATTGCTTCCGCGCGGCAGAGGTTCAAACAATCCTATCAAAG TGGTCGAGTTTGCAGCTAGTGAAGATAACGTGAACTGGACTCCTATCGGCAGATTCGGATTCACGAATCAGGATGCCGCC CTGGAATATTATGTAAAATCGATCAAAGCACGTTACATCAGACTCACGATTCCCGATGACGGAGGAAACAGTACTGTCGC TGCTATCAGAGAACTGGATGTCAAGGGCACTATTATTAACTGA
Upstream 100 bases:
>100_bases GTACTTACAGCCAATACCGGATCACGAAATGAGAAAGACACAAAACCTCGTCCAGAATCCGGGCTGGTAATTGTATAAGC ACAATAAATCAATGAGCATT
Downstream 100 bases:
>100_bases CACATGAGCATTCGATAGGTATTTTATAGCAAGTGCACTCTATAGTGTATCTTGAAGTCAAGCTACTCTCTTCCCCCAAA GAGAGTAGCTTTTATTTTGT
Product: putative chitobiase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 440; Mature: 440
Protein sequence:
>440_residues MRKISYILISGCITLSIIGCDETFDTSNTSEGILSLSENGLTILQSYNVGEKYNADLWIQHGGLELNNSTVTFTVDKSLL DSLNTADGTSYQILPEDCYQMTNTTVNVSAGDRLAKGTIVYDPTKIHALCGYDNVQYILPLKASTTGEKLNPGRSTLLLG FKVSEPIVTIINDGIQEINVNNVKELPITIGVPFSNKWNINCTLVNNQSVVDTYNSANQTYFSLLPAECYTKPESPSLSQ GVDQTTVSYKLKDNILPGNYMLPVQIGEVTSDATIRADKDTYTGFCIIKEGTKISKSGWEVLSFTTQEASGEGAGNGLAK CLIDGDTETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQDAA LEYYVKSIKARYIRLTIPDDGGNSTVAAIRELDVKGTIIN
Sequences:
>Translated_440_residues MRKISYILISGCITLSIIGCDETFDTSNTSEGILSLSENGLTILQSYNVGEKYNADLWIQHGGLELNNSTVTFTVDKSLL DSLNTADGTSYQILPEDCYQMTNTTVNVSAGDRLAKGTIVYDPTKIHALCGYDNVQYILPLKASTTGEKLNPGRSTLLLG FKVSEPIVTIINDGIQEINVNNVKELPITIGVPFSNKWNINCTLVNNQSVVDTYNSANQTYFSLLPAECYTKPESPSLSQ GVDQTTVSYKLKDNILPGNYMLPVQIGEVTSDATIRADKDTYTGFCIIKEGTKISKSGWEVLSFTTQEASGEGAGNGLAK CLIDGDTETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQDAA LEYYVKSIKARYIRLTIPDDGGNSTVAAIRELDVKGTIIN >Mature_440_residues MRKISYILISGCITLSIIGCDETFDTSNTSEGILSLSENGLTILQSYNVGEKYNADLWIQHGGLELNNSTVTFTVDKSLL DSLNTADGTSYQILPEDCYQMTNTTVNVSAGDRLAKGTIVYDPTKIHALCGYDNVQYILPLKASTTGEKLNPGRSTLLLG FKVSEPIVTIINDGIQEINVNNVKELPITIGVPFSNKWNINCTLVNNQSVVDTYNSANQTYFSLLPAECYTKPESPSLSQ GVDQTTVSYKLKDNILPGNYMLPVQIGEVTSDATIRADKDTYTGFCIIKEGTKISKSGWEVLSFTTQEASGEGAGNGLAK CLIDGDTETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQDAA LEYYVKSIKARYIRLTIPDDGGNSTVAAIRELDVKGTIIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48085; Mature: 48085
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50022 FA58C_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKISYILISGCITLSIIGCDETFDTSNTSEGILSLSENGLTILQSYNVGEKYNADLWIQ CCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEE HGGLELNNSTVTFTVDKSLLDSLNTADGTSYQILPEDCYQMTNTTVNVSAGDRLAKGTIV ECCEEECCCEEEEEECHHHHHCCCCCCCCEEEECCHHHHHHCCCEEEEECCCCEECCEEE YDPTKIHALCGYDNVQYILPLKASTTGEKLNPGRSTLLLGFKVSEPIVTIINDGIQEINV ECCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCEECCC NNVKELPITIGVPFSNKWNINCTLVNNQSVVDTYNSANQTYFSLLPAECYTKPESPSLSQ CCEEECCEEEECCCCCCEEEEEEEECCCEEEECCCCCCCEEEEEECHHHCCCCCCCCHHC GVDQTTVSYKLKDNILPGNYMLPVQIGEVTSDATIRADKDTYTGFCIIKEGTKISKSGWE CCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEEEEECCCEECCCCCE VLSFTTQEASGEGAGNGLAKCLIDGDTETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVE EEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEE LLPRGRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQDAALEYYVKSIKARYIRLTIPDD EEECCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHCEEEEEEEEECCC GGNSTVAAIRELDVKGTIIN CCCCEEEEEEEECCEEEEEC >Mature Secondary Structure MRKISYILISGCITLSIIGCDETFDTSNTSEGILSLSENGLTILQSYNVGEKYNADLWIQ CCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEE HGGLELNNSTVTFTVDKSLLDSLNTADGTSYQILPEDCYQMTNTTVNVSAGDRLAKGTIV ECCEEECCCEEEEEECHHHHHCCCCCCCCEEEECCHHHHHHCCCEEEEECCCCEECCEEE YDPTKIHALCGYDNVQYILPLKASTTGEKLNPGRSTLLLGFKVSEPIVTIINDGIQEINV ECCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCEECCC NNVKELPITIGVPFSNKWNINCTLVNNQSVVDTYNSANQTYFSLLPAECYTKPESPSLSQ CCEEECCEEEECCCCCCEEEEEEEECCCEEEECCCCCCCEEEEEECHHHCCCCCCCCHHC GVDQTTVSYKLKDNILPGNYMLPVQIGEVTSDATIRADKDTYTGFCIIKEGTKISKSGWE CCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEEEEECCCEECCCCCE VLSFTTQEASGEGAGNGLAKCLIDGDTETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVE EEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEE LLPRGRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQDAALEYYVKSIKARYIRLTIPDD EEECCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHCEEEEEEEEECCC GGNSTVAAIRELDVKGTIIN CCCCEEEEEEEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA