Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 29345975

GI number: 29345975

Start: 701828

End: 702187

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: BT_0565

Alternate gene names: 29345975

Gene position: 702187-701828 (Counterclockwise)

Preceding gene: 29345976

Following gene: 29345969

Centisome position: 11.22

GC content: 38.61

Gene sequence:

>360_bases
ATGGTAAAAGCAAATGCAACTGCACCTGCAATCAATGTTTTTGAAACAGAAAAAGAATACAAAGTTGAACTGGCTGCTCC
GGGAATGACAAAAGAGGACTTCAATGTTCGCATTGATGAAGACAACAACCTCGTTATCTCTATGGAGAAGAAGACTGAAA
ACAAAGAAGAGAAGAAAGAAGGTCGCTATCTACGTCGCGAATTCTCTTATTCTAAGTTTCAGCAGACGATGATTCTGCCG
GATAATGTAGATAAAGAAAAAATTTCTGCCGCAGTAGAAAACGGAGTTTTGAGCGTCCAACTTCCTAAGATTTCTGAAGA
AGAAGTGAAGAAGGCCGAAAAGCAAATCGAAGTAAAATAA

Upstream 100 bases:

>100_bases
ATGTTTAACTAAAAGATAGGAGACTAAGATTATGATGCCTGTTAGAAGAACTCAAAGTTGGTTACCAAGTATTTTTAACG
ATTTCTTTGATAACGATTGG

Downstream 100 bases:

>100_bases
TACAGTAACCACGATTCATCCCAAGGGGTGAAAACAATAATAAAAACAGCTCTTTTCCAACCAATAAGGATAAGAGCTGT
TTTTTATATAATCAAATTCT

Product: putative heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MVKANATAPAINVFETEKEYKVELAAPGMTKEDFNVRIDEDNNLVISMEKKTENKEEKKEGRYLRREFSYSKFQQTMILP
DNVDKEKISAAVENGVLSVQLPKISEEEVKKAEKQIEVK

Sequences:

>Translated_119_residues
MVKANATAPAINVFETEKEYKVELAAPGMTKEDFNVRIDEDNNLVISMEKKTENKEEKKEGRYLRREFSYSKFQQTMILP
DNVDKEKISAAVENGVLSVQLPKISEEEVKKAEKQIEVK
>Mature_119_residues
MVKANATAPAINVFETEKEYKVELAAPGMTKEDFNVRIDEDNNLVISMEKKTENKEEKKEGRYLRREFSYSKFQQTMILP
DNVDKEKISAAVENGVLSVQLPKISEEEVKKAEKQIEVK

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 13668; Mature: 13668

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKANATAPAINVFETEKEYKVELAAPGMTKEDFNVRIDEDNNLVISMEKKTENKEEKKE
CCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHH
GRYLRREFSYSKFQQTMILPDNVDKEKISAAVENGVLSVQLPKISEEEVKKAEKQIEVK
HHHHHHHCCHHHHHEEEECCCCCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MVKANATAPAINVFETEKEYKVELAAPGMTKEDFNVRIDEDNNLVISMEKKTENKEEKKE
CCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHH
GRYLRREFSYSKFQQTMILPDNVDKEKISAAVENGVLSVQLPKISEEEVKKAEKQIEVK
HHHHHHHCCHHHHHEEEECCCCCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA