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The map label for this gene is rhaR [C]

Identifier: 29345969

GI number: 29345969

Start: 694789

End: 695682

Strand: Reverse

Name: rhaR [C]

Synonym: BT_0559

Alternate gene names: 29345969

Gene position: 695682-694789 (Counterclockwise)

Preceding gene: 29345975

Following gene: 29345963

Centisome position: 11.11

GC content: 40.49

Gene sequence:

>894_bases
ATGGAACAGAAGAAACCGATGGAATTAGGCCTCCAACTGTTGAAGGATATAAATATAGTACGTCACAACGAATTTCGCTT
CATCAATGCCGAATTCGGATTTGTGACAAGTTTCTCTAAAATGGAAACGACTATCTTCAGTGTCGGACAACCGTACCGGC
TACAGGAAGGCCGTATTGCTATTGTCACTAATGGCTCGGCACGTGTTTTAATCAATCTGATCGAATATATTTTCCTGCCC
GACCATATATCCCTGATAGCTCCCAACTCTATCATACAAATCATAGAAGTATCTCACGATTTTGATGCTCACATGATGGC
AGTAGACCTGAACTTTCTGCCGATATCCGGAAAGGAAGAATTCTTCACCCATTTCCTCCAACAAAAGAAAAATCTCCTGT
TTCCACTGTCTACCGAAGAACAAATACAGATAGAGAATTTTGTGACGGTCATGTGGAGTGTATTGCAAGAACCTGTATTC
AGAAAAGAGGTCATTCAGCATTTACTGGTAGGATTACTATATAATATAGAGTATATAGCCAAAAGCAAAGGGCAGGCCGA
ACTCAGTCCATTAACCCATCAAAACGACATTTTTCAGCGCCTCATTTCTTTGGTCAACACCTATAGCAAGACAGAGCGGA
ATGTCAGTTTCTATGCGAATAAACTTTGTCTCACTCCCCGTTATCTGAACACTGTAATCCGGCAAACCAGCCAGCAAACA
GTAATGGACTGGATAAACCAGTCCATTATACTAGAGGCTAAAGTATTGCTAAAACATAGCAACCGCCTTGTTTATCAGAT
ATCAGATGAATTAAACTTTCCCAATCCGTCTTTCTTCAGCAAGTTTTTCAAACGAATGACCGGAATGACGCCTCAGGAAT
ATCAAAAGAATTAA

Upstream 100 bases:

>100_bases
TTCTGATAGTTGGAAAATATGTCCCAATAGTTCGATTCATCCTAAAAAAAGAGAAGATTCAAGGGCTATTTCTTATCTTT
GCCGGAAAAGAACTGAGAAA

Downstream 100 bases:

>100_bases
GGATTACTTTGAAAACTCCTTTATCCGCTGTTCTTCATCCAGTTTACAAATCAACAGTGTATTATCTTTCTCAGCAATGA
TATATCCATCCAGACCCTGA

Product: transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Transcriptional Regulator AraC Family; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Transcriptional Regulator

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MEQKKPMELGLQLLKDINIVRHNEFRFINAEFGFVTSFSKMETTIFSVGQPYRLQEGRIAIVTNGSARVLINLIEYIFLP
DHISLIAPNSIIQIIEVSHDFDAHMMAVDLNFLPISGKEEFFTHFLQQKKNLLFPLSTEEQIQIENFVTVMWSVLQEPVF
RKEVIQHLLVGLLYNIEYIAKSKGQAELSPLTHQNDIFQRLISLVNTYSKTERNVSFYANKLCLTPRYLNTVIRQTSQQT
VMDWINQSIILEAKVLLKHSNRLVYQISDELNFPNPSFFSKFFKRMTGMTPQEYQKN

Sequences:

>Translated_297_residues
MEQKKPMELGLQLLKDINIVRHNEFRFINAEFGFVTSFSKMETTIFSVGQPYRLQEGRIAIVTNGSARVLINLIEYIFLP
DHISLIAPNSIIQIIEVSHDFDAHMMAVDLNFLPISGKEEFFTHFLQQKKNLLFPLSTEEQIQIENFVTVMWSVLQEPVF
RKEVIQHLLVGLLYNIEYIAKSKGQAELSPLTHQNDIFQRLISLVNTYSKTERNVSFYANKLCLTPRYLNTVIRQTSQQT
VMDWINQSIILEAKVLLKHSNRLVYQISDELNFPNPSFFSKFFKRMTGMTPQEYQKN
>Mature_297_residues
MEQKKPMELGLQLLKDINIVRHNEFRFINAEFGFVTSFSKMETTIFSVGQPYRLQEGRIAIVTNGSARVLINLIEYIFLP
DHISLIAPNSIIQIIEVSHDFDAHMMAVDLNFLPISGKEEFFTHFLQQKKNLLFPLSTEEQIQIENFVTVMWSVLQEPVF
RKEVIQHLLVGLLYNIEYIAKSKGQAELSPLTHQNDIFQRLISLVNTYSKTERNVSFYANKLCLTPRYLNTVIRQTSQQT
VMDWINQSIILEAKVLLKHSNRLVYQISDELNFPNPSFFSKFFKRMTGMTPQEYQKN

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34646; Mature: 34646

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQKKPMELGLQLLKDINIVRHNEFRFINAEFGFVTSFSKMETTIFSVGQPYRLQEGRIA
CCCCCHHHHHHHHHHHCCCEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCEE
IVTNGSARVLINLIEYIFLPDHISLIAPNSIIQIIEVSHDFDAHMMAVDLNFLPISGKEE
EEECCCHHHHHHHHHHHHCCCCCEEECCCHHEEEEEECCCCCCEEEEEEEEEEECCCCHH
FFTHFLQQKKNLLFPLSTEEQIQIENFVTVMWSVLQEPVFRKEVIQHLLVGLLYNIEYIA
HHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
KSKGQAELSPLTHQNDIFQRLISLVNTYSKTERNVSFYANKLCLTPRYLNTVIRQTSQQT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
VMDWINQSIILEAKVLLKHSNRLVYQISDELNFPNPSFFSKFFKRMTGMTPQEYQKN
HHHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHCCC
>Mature Secondary Structure
MEQKKPMELGLQLLKDINIVRHNEFRFINAEFGFVTSFSKMETTIFSVGQPYRLQEGRIA
CCCCCHHHHHHHHHHHCCCEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCEE
IVTNGSARVLINLIEYIFLPDHISLIAPNSIIQIIEVSHDFDAHMMAVDLNFLPISGKEE
EEECCCHHHHHHHHHHHHCCCCCEEECCCHHEEEEEECCCCCCEEEEEEEEEEECCCCHH
FFTHFLQQKKNLLFPLSTEEQIQIENFVTVMWSVLQEPVFRKEVIQHLLVGLLYNIEYIA
HHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
KSKGQAELSPLTHQNDIFQRLISLVNTYSKTERNVSFYANKLCLTPRYLNTVIRQTSQQT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
VMDWINQSIILEAKVLLKHSNRLVYQISDELNFPNPSFFSKFFKRMTGMTPQEYQKN
HHHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA