Click here to switch to the map view.

The map label for this gene is 29345960

Identifier: 29345960

GI number: 29345960

Start: 676005

End: 676742

Strand: Reverse

Name: 29345960

Synonym: BT_0550

Alternate gene names: NA

Gene position: 676742-676005 (Counterclockwise)

Preceding gene: 29345961

Following gene: 29345958

Centisome position: 10.81

GC content: 44.58

Gene sequence:

>738_bases
ATGGTTGCCCTTATCATTTCAGTAGCTAGTGCCCAAGCGCAAAAGTCGCAAGTTATCGCCCATCGTGGCTACTGGAAAAC
AGCAGGTTCTGCGCAAAATAGTATCACAGCACTTCAAAAAGCCGATTCTATCCATTGCTATGGCTCCGAATTTGATGTAT
GGCTTACCAAAGACAATAAACTGGTTATCAATCATGACCCTGTCTATAAGATGAAATACATGGAGTATTCCAAAGGTGAC
GCTCTTACAGGATTGAAACTATCGAACGGAGAGAACCTGCCCAGCCTGGAACAGTATCTGGAAGCCGGTAAAAAATGCAA
TACCAAACTTATATTGGAACTAAAAGCACTTAACAGCAAAAAGCGTGAAACGAAAGCCGTACAGGAAATTCTTGCCTTGG
TAACAAAGCTGGGACTGGAAAACCGTATGGAATATATCACTTTCTCACTGCACGCCATGAAAGAGTTTATCCGCCTGGCA
CCTGCCGGAACTCCGGTATTCTATCTCAACGGCGAGCTATCTCCCAAAGAGCTGAAAGACCTCGGTGCAGCCGGACTCGA
CTATCACATGGGAGTAATCAAGAAACATCCCGAATGGATCAAAGAAGCCCATGATCTCGGACTGAAAGTCAATGTATGGA
CTGTAGATAAAGCAGAAGACATGAAGTGGCTCATAGACCAAAAGGTGGATTTCATTACGACCAACGAGCCGACTGTGGCA
CAGGAAATACTAAAATAG

Upstream 100 bases:

>100_bases
ATTAGCATAATAACAGGCTGATCTGTGTTTTATTTTTTATAATTTTGGACTCATAAACTTTTTAAATGTACTATCAATGA
AGATAAAAAGAATTATTCTA

Downstream 100 bases:

>100_bases
TTACTCTCAGAAAATGTAAAAAGCCGACAGAAACTTTTTGCAAATATTCGATAGATACAAGAAGCACCATTATACATATT
TATTTGCTGTATAATGGTGC

Product: putative glycerophosphodiester phosphodiesterase

Products: alcohol; sn-glycerol 3-phosphate

Alternate protein names: Glycerophosphodiester Phosphodiesterase; Glycerophosphoryl Diester Phosphodiesterase Family Protein; Glycerophosphodiester Phosphodiesterase Family Protein; Glycerophosphodiesterase

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MVALIISVASAQAQKSQVIAHRGYWKTAGSAQNSITALQKADSIHCYGSEFDVWLTKDNKLVINHDPVYKMKYMEYSKGD
ALTGLKLSNGENLPSLEQYLEAGKKCNTKLILELKALNSKKRETKAVQEILALVTKLGLENRMEYITFSLHAMKEFIRLA
PAGTPVFYLNGELSPKELKDLGAAGLDYHMGVIKKHPEWIKEAHDLGLKVNVWTVDKAEDMKWLIDQKVDFITTNEPTVA
QEILK

Sequences:

>Translated_245_residues
MVALIISVASAQAQKSQVIAHRGYWKTAGSAQNSITALQKADSIHCYGSEFDVWLTKDNKLVINHDPVYKMKYMEYSKGD
ALTGLKLSNGENLPSLEQYLEAGKKCNTKLILELKALNSKKRETKAVQEILALVTKLGLENRMEYITFSLHAMKEFIRLA
PAGTPVFYLNGELSPKELKDLGAAGLDYHMGVIKKHPEWIKEAHDLGLKVNVWTVDKAEDMKWLIDQKVDFITTNEPTVA
QEILK
>Mature_245_residues
MVALIISVASAQAQKSQVIAHRGYWKTAGSAQNSITALQKADSIHCYGSEFDVWLTKDNKLVINHDPVYKMKYMEYSKGD
ALTGLKLSNGENLPSLEQYLEAGKKCNTKLILELKALNSKKRETKAVQEILALVTKLGLENRMEYITFSLHAMKEFIRLA
PAGTPVFYLNGELSPKELKDLGAAGLDYHMGVIKKHPEWIKEAHDLGLKVNVWTVDKAEDMKWLIDQKVDFITTNEPTVA
QEILK

Specific function: Unknown

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.4.46

Molecular weight: Translated: 27520; Mature: 27520

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALIISVASAQAQKSQVIAHRGYWKTAGSAQNSITALQKADSIHCYGSEFDVWLTKDNK
CEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEEECCCEEEEEECCCE
LVINHDPVYKMKYMEYSKGDALTGLKLSNGENLPSLEQYLEAGKKCNTKLILELKALNSK
EEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCC
KRETKAVQEILALVTKLGLENRMEYITFSLHAMKEFIRLAPAGTPVFYLNGELSPKELKD
HHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
LGAAGLDYHMGVIKKHPEWIKEAHDLGLKVNVWTVDKAEDMKWLIDQKVDFITTNEPTVA
CCCCCCHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCHHH
QEILK
HHHHC
>Mature Secondary Structure
MVALIISVASAQAQKSQVIAHRGYWKTAGSAQNSITALQKADSIHCYGSEFDVWLTKDNK
CEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEEECCCEEEEEECCCE
LVINHDPVYKMKYMEYSKGDALTGLKLSNGENLPSLEQYLEAGKKCNTKLILELKALNSK
EEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCC
KRETKAVQEILALVTKLGLENRMEYITFSLHAMKEFIRLAPAGTPVFYLNGELSPKELKD
HHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
LGAAGLDYHMGVIKKHPEWIKEAHDLGLKVNVWTVDKAEDMKWLIDQKVDFITTNEPTVA
CCCCCCHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCHHH
QEILK
HHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: glycerophosphodiester; H2O

Specific reaction: A glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA