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The map label for this gene is xylR [H]

Identifier: 29144135

GI number: 29144135

Start: 3984262

End: 3985440

Strand: Reverse

Name: xylR [H]

Synonym: t3857

Alternate gene names: 29144135

Gene position: 3985440-3984262 (Counterclockwise)

Preceding gene: 29144145

Following gene: 29144133

Centisome position: 83.17

GC content: 53.01

Gene sequence:

>1179_bases
ATGTTTGATAAACGTCACCGTATCACTCTGTTATTTAACGCGAATAAAGCCTATGACCGTCAGGTAGTGGAGGGGGTGGG
TGAATATTTACAAGCCTCGCAATCCGAATGGGATATATTTATTGAGGAAGATTTCCGTGCCCGTATCGATAACATTAAAG
AGTGGTTAGGCGACGGCGTTATTGCCGATTACGATGATGACGATATCGCGCAATTATTGGCCGATGTCGACGTACCCATT
GTCGGGGTCGGCGGTTCTTACCATCTTGCTGAAAATTATCCCGCCGTTCATTACATCGCCACCGATAATCATGCGCTCGT
TGAAAGCGCTTTCCTGCATTTAAAAGAAAAAGGCGTTAACCGCTTCGCGTTTTACGGTTTGCCCGACTCCAGCCGCAAAC
ATTGGGCGGCGGAACGGGAATACGCCTTTCGCCAGCTGGTCGCCGAGGAAAAATACCGCGGCGTAGTCTATCAGGGGCTG
GAAACCGCGCCGGAAAACTGGCAGCACGCGCAAAATCGCCTCGCCGACTGGCTTCAGACGCTGCCGCCGCAAACCGGCAT
CATTGCCGTAACGGATGCCCGCGCCCGTCACGTATTGCAGGCCTGCGAACACCTGCATATTCCGGTGCCGGAAAAACTTT
GCGTTATCGGTATTGATAACGAAGAGTTAACCCGTTATCTGTCGCGCGTCGCGCTTTCCTCCGTCGCGCAGGGGGCGCGG
CAAATGGGCTATCAGGCGGCGAAGCTGCTGCACCGTTTGCTGGCGCGCGAAGAGATGCCGTTACAGCGCATTCTGGTGCC
GCCGGTGCGCGTCATTGCGCGCCGCTCGACAGACTATCGCTCCCTGACCGATCCGGCGGTTATCCAGGCGATGCACTTTA
TTCGTAACCATGCCTGTAAGGGCATTAAAGTCGAGCAGGTGCTGGACGCGGTTGGGATTTCACGTTCAAACCTGGAAAAA
CGTTTTAAGGAAGAAGTTGGCGAGACGATACATGCGCTGATCCACGCCGAAAAGCTGGAAAAAGCGCGTAGTTTGTTGAT
TTCCACCACGTTGGCGATAAACGAAATTTCGCAAATGTGCGGCTACCCGTCGCTGCAATATTTCTATTCGGTGTTTAAAA
AGGAGTACGTCACTACGCCTAAGGAGTATCGCGACCAGCATAGTGAAGCGTTGTTGTAG

Upstream 100 bases:

>100_bases
TTTCAGGCGCAAAATAATTTGTCATCATTCGCCAGACCGTTATGTCAGCCGTTTTGATAGTATCCATGAGTCCAGGTTCA
CTTTTGCAGGATATATCCTC

Downstream 100 bases:

>100_bases
TTTATCCAGCCTACAGATGCCTTGTAAGCCGGATAGCGTAGCGCCATCCGGCACACAGAATTACATATGCGCGGCGATCA
GACGCTGGTTGTCCTGGTAC

Product: xylose operon regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDNIKEWLGDGVIADYDDDDIAQLLADVDVPI
VGVGGSYHLAENYPAVHYIATDNHALVESAFLHLKEKGVNRFAFYGLPDSSRKHWAAEREYAFRQLVAEEKYRGVVYQGL
ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHVLQACEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGAR
QMGYQAAKLLHRLLAREEMPLQRILVPPVRVIARRSTDYRSLTDPAVIQAMHFIRNHACKGIKVEQVLDAVGISRSNLEK
RFKEEVGETIHALIHAEKLEKARSLLISTTLAINEISQMCGYPSLQYFYSVFKKEYVTTPKEYRDQHSEALL

Sequences:

>Translated_392_residues
MFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDNIKEWLGDGVIADYDDDDIAQLLADVDVPI
VGVGGSYHLAENYPAVHYIATDNHALVESAFLHLKEKGVNRFAFYGLPDSSRKHWAAEREYAFRQLVAEEKYRGVVYQGL
ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHVLQACEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGAR
QMGYQAAKLLHRLLAREEMPLQRILVPPVRVIARRSTDYRSLTDPAVIQAMHFIRNHACKGIKVEQVLDAVGISRSNLEK
RFKEEVGETIHALIHAEKLEKARSLLISTTLAINEISQMCGYPSLQYFYSVFKKEYVTTPKEYRDQHSEALL
>Mature_392_residues
MFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDNIKEWLGDGVIADYDDDDIAQLLADVDVPI
VGVGGSYHLAENYPAVHYIATDNHALVESAFLHLKEKGVNRFAFYGLPDSSRKHWAAEREYAFRQLVAEEKYRGVVYQGL
ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHVLQACEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGAR
QMGYQAAKLLHRLLAREEMPLQRILVPPVRVIARRSTDYRSLTDPAVIQAMHFIRNHACKGIKVEQVLDAVGISRSNLEK
RFKEEVGETIHALIHAEKLEKARSLLISTTLAINEISQMCGYPSLQYFYSVFKKEYVTTPKEYRDQHSEALL

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=392, Percent_Identity=92.3469387755102, Blast_Score=756, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 44764; Mature: 44764

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDNIKEWLGDGV
CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCC
IADYDDDDIAQLLADVDVPIVGVGGSYHLAENYPAVHYIATDNHALVESAFLHLKEKGVN
EECCCCHHHHHHHHHCCCCEEECCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCC
RFAFYGLPDSSRKHWAAEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQT
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHH
LPPQTGIIAVTDARARHVLQACEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGAR
CCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QMGYQAAKLLHRLLAREEMPLQRILVPPVRVIARRSTDYRSLTDPAVIQAMHFIRNHACK
HHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC
GIKVEQVLDAVGISRSNLEKRFKEEVGETIHALIHAEKLEKARSLLISTTLAINEISQMC
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYPSLQYFYSVFKKEYVTTPKEYRDQHSEALL
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDNIKEWLGDGV
CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCC
IADYDDDDIAQLLADVDVPIVGVGGSYHLAENYPAVHYIATDNHALVESAFLHLKEKGVN
EECCCCHHHHHHHHHCCCCEEECCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCC
RFAFYGLPDSSRKHWAAEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQT
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHH
LPPQTGIIAVTDARARHVLQACEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGAR
CCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QMGYQAAKLLHRLLAREEMPLQRILVPPVRVIARRSTDYRSLTDPAVIQAMHFIRNHACK
HHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC
GIKVEQVLDAVGISRSNLEKRFKEEVGETIHALIHAEKLEKARSLLISTTLAINEISQMC
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYPSLQYFYSVFKKEYVTTPKEYRDQHSEALL
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]