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The map label for this gene is ompS2

Identifier: 29141798

GI number: 29141798

Start: 1403668

End: 1404819

Strand: Reverse

Name: ompS2

Synonym: t1341

Alternate gene names: 29141798

Gene position: 1404819-1403668 (Counterclockwise)

Preceding gene: 29141800

Following gene: 29141797

Centisome position: 29.32

GC content: 47.83

Gene sequence:

>1152_bases
ATGAAAAGAAAAGTATTGGCACTTGTCATCCCGGCTCTGCTGGCTGCTGGCGCAGCACACGCCGCTGAAATTTATAACAA
AGACGGCAACAAACTGGACCTTTACGGGAAAGTAGACGGCCTGCACTATTTCTCTGATGACTCTTCTAAAGATGGCGATC
AGACCTATATGCGTGTCGGCTTTAAAGGCGAAACGCAGATTAACGACCAACTGACCGGTTACGGCCAGTGGGAATATAAC
GTTCAGGCTAACACTACCGAAGGCGAAGGCGCGAACTCCTGGACTCGTCTGGCATTCGCCGGTCTGAAATTCGGCGACTA
CGGCTCATTCGACTATGGTCGTAACTACGGCGTCCTGTACGACGTGGAAGGCTGGACCGATATGCTGCCTGAGTTCGGCG
GCGACTCCTATACTTACGCTGACAACTACATGACCGGTCGTGCTAACGGCGTGGCCACCTACCGTAACACTGATTTCTTC
GGTCTGGTAGACGGTCTGAACTTCGCGTTGCAATATCAGGGTAAAAATGAAAGCCAAAGCGCTGACGATGTAAATATCGG
TACCAATAACCGTAATAATGGCGACGATATTCGTTACGATAACGGTGATGGCTTCGGTATTTCTACTACCTATGATATTG
GCATGGGCTTCAGCGCAGGCGCTGCGTATACCACTTCCGATCGTACTAATGAGCAAGTCAATGCTGGCGGCACGATTGCT
GGCGGCGACAAAGCGGATGCATGGACAGCTGGCTTGAAATATGATGCCAACAACATCTATTTAGCGACTATGTATTCTGA
AACCCGTAATATGACGCCTTATGGTAAAACGGACAAGGGTTATGATGGCGGCGTAGCAAACAAAACGCAAAACTTCGAAG
TTACAGCCCAATATCAATTTGATTTCGGTCTGCGCCCGGCGGTTTCTTTCCTGATGTCTAAAGGTAAAGATCTGACCTAT
AACAACGTTAATGGCGATGATAAAGACCTGGTTAAATATGCTGATGTAGGTGCTACCTACTATTTCAACAAAAACTTCTC
CACCTATGTTGATTATAAAATCAACCTGCTGGATGACGACGACCCGTTCTATAAAGATGCCGGTATCAGCACTGATGATA
TCGTCGCGCTGGGTATGGTTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TTTGCTGAAATAATATTATTCAGATTAGGATGCCTTTGATTCAACGAATCTGTAGAAGTTCAATCTTTTGCAAATAAGTT
AAGTTTTTAAGGATAAAAAA

Downstream 100 bases:

>100_bases
TTATTCATTAATTCTTCTCAAGCCCGCCGTTTCGGCGGGCTTTTCTTTTTCTATCACCACCGTTCTAAAAACAGAACGCA
CTGTTCCCTGGGCACAGATT

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVGFKGETQINDQLTGYGQWEYN
VQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFF
GLVDGLNFALQYQGKNESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNAGGTIA
GGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTY
NNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDPFYKDAGISTDDIVALGMVYQF

Sequences:

>Translated_383_residues
MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVGFKGETQINDQLTGYGQWEYN
VQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFF
GLVDGLNFALQYQGKNESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNAGGTIA
GGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTY
NNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDPFYKDAGISTDDIVALGMVYQF
>Mature_383_residues
MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVGFKGETQINDQLTGYGQWEYN
VQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFF
GLVDGLNFALQYQGKNESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNAGGTIA
GGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTY
NNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDPFYKDAGISTDDIVALGMVYQF

Specific function: Non-Specific Porin. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family

Homologues:

Organism=Escherichia coli, GI1787641, Length=388, Percent_Identity=80.1546391752577, Blast_Score=573, Evalue=1e-165,
Organism=Escherichia coli, GI1788544, Length=383, Percent_Identity=66.0574412532637, Blast_Score=470, Evalue=1e-134,
Organism=Escherichia coli, GI1786436, Length=385, Percent_Identity=60.7792207792208, Blast_Score=444, Evalue=1e-126,
Organism=Escherichia coli, GI1787160, Length=392, Percent_Identity=57.6530612244898, Blast_Score=396, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OMPS2_SALTI (Q56111)

Other databases:

- EMBL:   X89756
- EMBL:   AL627271
- EMBL:   AE014613
- RefSeq:   NP_456059.1
- RefSeq:   NP_805140.1
- ProteinModelPortal:   Q56111
- SMR:   Q56111
- GeneID:   1070768
- GeneID:   1248023
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t1341
- KEGG:   sty:STY1649
- HOGENOM:   HBG673855
- OMA:   NTTEGAN
- ProtClustDB:   CLSK2301990
- BioCyc:   SENT209261:T1341-MONOMER
- BioCyc:   SENT220341:STY1649-MONOMER
- InterPro:   IPR001897
- InterPro:   IPR001702
- Gene3D:   G3DSA:2.40.160.10
- PRINTS:   PR00183
- PRINTS:   PR00182

Pfam domain/function: PF00267 Porin_1

EC number: NA

Molecular weight: Translated: 42183; Mature: 42183

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG
CCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY
CCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE
DVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGKNESQS
ECCCHHHHHHHHCCCCEEEECCEEECCCCCEEEEECCCEEEEECCCEEEEEECCCCCCCC
ADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNAGGTIA
CCCEECCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCEEC
GGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVTAQYQF
CCCCCCEEECCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
DFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDD
CCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEEEEEECCC
DPFYKDAGISTDDIVALGMVYQF
CCCHHCCCCCHHHEEEEEEEECC
>Mature Secondary Structure
MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG
CCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY
CCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE
DVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGKNESQS
ECCCHHHHHHHHCCCCEEEECCEEECCCCCEEEEECCCEEEEECCCEEEEEECCCCCCCC
ADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNAGGTIA
CCCEECCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCEEC
GGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVTAQYQF
CCCCCCEEECCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
DFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDD
CCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEEEEEECCC
DPFYKDAGISTDDIVALGMVYQF
CCCHHCCCCCHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504