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The map label for this gene is rnfD [H]

Identifier: 29141783

GI number: 29141783

Start: 1384686

End: 1385744

Strand: Reverse

Name: rnfD [H]

Synonym: t1324

Alternate gene names: 29141783

Gene position: 1385744-1384686 (Counterclockwise)

Preceding gene: 29141784

Following gene: 29141782

Centisome position: 28.92

GC content: 56.28

Gene sequence:

>1059_bases
ATGGTATTCAGAATCGCAAGCTCGCCTTATACCCATAACCAGCGCCAGACATCGCGAATCATGTTGCTGGTATTAATCGC
CGCTCTGCCGGGGATTGCCGCGCAGACGTGGTTTTTTGGTTGGGGAACGCTTTTCCAGATCGTTCTGGCTGCTATCACGG
CGCTCGTCGCGGAAGCCATTGTCCTTAGACTGCGCAAACAATCGGTCGCCAGTCACCTGCAGGATTATTCCGCGTTATTG
ACGGGGCTTTTGCTGGCGGTCAGCATCCCTCCGCTCGCGCCCTGGTGGATGGTCGTGCTGGGAACCGGATTCGCCATTAT
TATCGCTAAACAGTTATATGGCGGGCTGGGACAAAACCCCTTTAATCCGGCCATGATCGGCTACGTGGTGCTATTAATTT
CCTTTCCGGTGCAAATGACAAGCTGGTTGCCGCCTTATGAAATAGCCGCAACAACGCCCGATATACTGGACACGTTACGG
ATGATTTTTAGCGGGCATACCGCCAGCGGCGGCGATATGACGCTACTACGTATCGGTATTGACGGTATCAGCCAGGCGAC
GCCGCTGGATACGTTTAAAACGTCCTTGCGCGCCGGGCACTCCGTTGAGCAAATCATGCAGTACCCGATATACAGCGGTG
CGCTGGCTGGCGTGGGCTGGCAGTGGGTTAACCTCGCCTGGCTTGTCGGCGGCGTATTCCTGCTGTGGCAAAAAGCCATC
CGCTGGCATATCCCGGTCAGTTTTCTGCTCACGCTGGCGCTATGCGCCGCGTTAGGTTGGCTTTTCTCGCCCGCTACGCT
GGCCTCGCCGCAGCTTCATCTGCTGTCAGGCGCCACCATGCTGGGCGCATTTTTTATCTTGACGGATCCGGTTACCGCCT
CCACGACCAACCGTGGACGTTTAATTTTCGGCGCGCTGGCTGGGGTATTAGTGTGGCTGATTCGTAGCTTCGGCGGCTAT
CCGGACGGCGTTGCTTTTGCTGTCCTGTTGGCGAATATCACGGTTCCTCTGATCGACTACTACACGCGCCCCCGCGTCTA
TGGACATCGCAAAGGATAA

Upstream 100 bases:

>100_bases
TGTCGAACCGGCCGACCCGCGTAAAGCCGCGGTTGCTGCGGCTATCGCTCGCGTTCAGGCAAAAAAAGCAGCACAGCAGC
AGGTTGTTAACGAGGATTAA

Downstream 100 bases:

>100_bases
ACCATGCTGAAAACGATTCGTAAACACGGTATTACGCTGGCGCTTTTTGCCGCAGGCTCTACGGGATTGACCGCGGTGAT
TAATCAGATGACAAAATCAA

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MVFRIASSPYTHNQRQTSRIMLLVLIAALPGIAAQTWFFGWGTLFQIVLAAITALVAEAIVLRLRKQSVASHLQDYSALL
TGLLLAVSIPPLAPWWMVVLGTGFAIIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPYEIAATTPDILDTLR
MIFSGHTASGGDMTLLRIGIDGISQATPLDTFKTSLRAGHSVEQIMQYPIYSGALAGVGWQWVNLAWLVGGVFLLWQKAI
RWHIPVSFLLTLALCAALGWLFSPATLASPQLHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGVLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHRKG

Sequences:

>Translated_352_residues
MVFRIASSPYTHNQRQTSRIMLLVLIAALPGIAAQTWFFGWGTLFQIVLAAITALVAEAIVLRLRKQSVASHLQDYSALL
TGLLLAVSIPPLAPWWMVVLGTGFAIIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPYEIAATTPDILDTLR
MIFSGHTASGGDMTLLRIGIDGISQATPLDTFKTSLRAGHSVEQIMQYPIYSGALAGVGWQWVNLAWLVGGVFLLWQKAI
RWHIPVSFLLTLALCAALGWLFSPATLASPQLHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGVLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
>Mature_352_residues
MVFRIASSPYTHNQRQTSRIMLLVLIAALPGIAAQTWFFGWGTLFQIVLAAITALVAEAIVLRLRKQSVASHLQDYSALL
TGLLLAVSIPPLAPWWMVVLGTGFAIIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPYEIAATTPDILDTLR
MIFSGHTASGGDMTLLRIGIDGISQATPLDTFKTSLRAGHSVEQIMQYPIYSGALAGVGWQWVNLAWLVGGVFLLWQKAI
RWHIPVSFLLTLALCAALGWLFSPATLASPQLHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGVLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHRKG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=352, Percent_Identity=87.7840909090909, Blast_Score=627, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 38235; Mature: 38235

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFRIASSPYTHNQRQTSRIMLLVLIAALPGIAAQTWFFGWGTLFQIVLAAITALVAEAI
CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRLRKQSVASHLQDYSALLTGLLLAVSIPPLAPWWMVVLGTGFAIIIAKQLYGGLGQNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCC
FNPAMIGYVVLLISFPVQMTSWLPPYEIAATTPDILDTLRMIFSGHTASGGDMTLLRIGI
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECC
DGISQATPLDTFKTSLRAGHSVEQIMQYPIYSGALAGVGWQWVNLAWLVGGVFLLWQKAI
CCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
RWHIPVSFLLTLALCAALGWLFSPATLASPQLHLLSGATMLGAFFILTDPVTASTTNRGR
HHCCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCC
LIFGALAGVLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVFRIASSPYTHNQRQTSRIMLLVLIAALPGIAAQTWFFGWGTLFQIVLAAITALVAEAI
CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRLRKQSVASHLQDYSALLTGLLLAVSIPPLAPWWMVVLGTGFAIIIAKQLYGGLGQNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCC
FNPAMIGYVVLLISFPVQMTSWLPPYEIAATTPDILDTLRMIFSGHTASGGDMTLLRIGI
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECC
DGISQATPLDTFKTSLRAGHSVEQIMQYPIYSGALAGVGWQWVNLAWLVGGVFLLWQKAI
CCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
RWHIPVSFLLTLALCAALGWLFSPATLASPQLHLLSGATMLGAFFILTDPVTASTTNRGR
HHCCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCC
LIFGALAGVLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA