Click here to switch to the map view.

The map label for this gene is rnfC [H]

Identifier: 29141784

GI number: 29141784

Start: 1385745

End: 1387766

Strand: Reverse

Name: rnfC [H]

Synonym: t1325

Alternate gene names: 29141784

Gene position: 1387766-1385745 (Counterclockwise)

Preceding gene: 29141785

Following gene: 29141783

Centisome position: 28.96

GC content: 58.95

Gene sequence:

>2022_bases
ATGCTTAAACTATTTTCCGCTTTCAGAAAAGATAAAATCTGGGATTTCGACGGTGGTATTCATCCGCCCGAAATGAAGTC
CCAGTCAAACGGCACGCCGCTGCGCCAGGTGCCTTTGGCGCCGCGCTTTGTTATCCCTTTAAAACAGCACATTGGCGCTG
AGGGCGAGCTGTGCGTTAGCGTCGGCGATCGCGTGCTACGCGGCCAGGCGCTTACCCGTGGACGTGGGAGAATGCTGCCG
GTACACGCGCCCACCTCCGGGACGGTTATCGCTATTGCGCCCCACTCGACGGCGCATCCTTCGGCGCTGGCGGAGTTAAG
CGTCATCATTGATGCCGACGGCGAGGACCGCTGGATTGAACGCGAGGGCTGGTCTGATTACCGCGCCCACAGCCGTGAAG
CGCTCATTGAACGCATTCATCAGTATGGCGTTGCCGGGCTTGGCGGCGCAGGGTTTCCCACCGGCGTTAAATTGCAGGGC
GGCGACGATAAAATCACCACGCTTATTATCAATGCCGCAGAGTGCGAACCTTACATTACGGCGGACGATCGTCTGATGCA
GGACTGCGCCGCGCAGATTGTGGAAGGTATTCGCATCCTGGCGCATATTCTGCAACCGCGTGAGGTATTAATCGGCATTG
AAGATAACAAACCGCAGGCTATTTCCATGCTGCGCGCCGTACTGGCTGACGCTCATGATATTTCATTACGTGTTATCCCG
ACCAAATACCCTTCCGGCGGCGCAAAACAGCTCACCCAAATACTGACGGGAAAACAGGTTCCCCACGGCGGGCGCTCCTC
TGATATTGGCGTGCTGATGCAAAACGTCGGTACGGCATATGCCGTGAAACGCGCCGTGGTTGACGGCGAACCGATCACAG
AACGCGTCGTCACCTTAACGGGTGAAGCGATAAGCCGTCCGGGTAACGTCTGGGCGCGGCTCGGCACTCCCGTTCGTCAT
TTGCTTAACGATGCCGGGTTCTGCCCCTCTGCTGACCAGATGGTCATCATGGGCGGCCCGTTGATGGGATTCACCCTTCC
CTGGCTTGACGTACCGGTCGTAAAAATCACCAACTGCCTGCTGGCGCCATCCGTGACTGAAATGGGGGCGCCTCAGGAAG
AGAAAAGCTGTATTCGTTGCAGCGCTTGCGCTGACGCCTGCCCTGCCGACCTTTTACCGCAGCAGCTTTATTGGTTCAGC
AAAGGGCAGCAGCATGACAAGGCTACCGCTCACCATATTGCTGATTGTATAGAATGCGGCGCCTGCGCCTGGGTCTGCCC
GAGTAATATTCCGCTCGTCCAATATTTCCGTCAGGAAAAAGCGGAGATTAATGCGATCAGGCTTGAAGAAAAACGCGCCG
CCGAAGCCAAAGCGCGTTTTGAGGCTCGTCAGGCAAGACTGGAGCGCGAAAAAGCCGCCCGCCTTGCACGTCACAAGAGC
GCAGCGGTACAACCAGCGGCAAAAGATCAGGATGCCATTGCCGCTGCGCTGGCGCGGGTAAAAGAGAAACAGGCGCAGGC
CACGCAACCGGTGGTTATTCAGGCGGGTAGTCTGCCAGACAATAGCGCCGTCATCGCGGCCCGTGAAGCGCGTAAAGCGC
AAGCGCGCGCTAAACAAGCCGCTCATCCGATGGCTGACAGCGCGATATCCGGCGACGATCCGCGTAAAGCCGCAGTGGAA
GCGGCTATCGCCCGCGCCAAAGCTCGTAAGCAGGAGCAGCAGGCCGGAAGCGAACCTGCCGAGCCGGTCGACCCGCGTAA
AGCCGCGGTGGAAGCGGCTATCGCCCGCGCCAAAGCCCGCAAACAGGAGCAGCAGGCCGGAAGCGAACCCGCCGAACCGG
TCGATCCGCGTAAAGCCGCGGTGGAAGCGGCGATCGCCCGTGCCAAAGCCCGTAAGCAGGAGCAGCAGACCGTAAGCGAA
CCTGTCGAACCGGCCGACCCGCGTAAAGCCGCGGTTGCTGCGGCTATCGCTCGCGTTCAGGCAAAAAAAGCAGCACAGCA
GCAGGTTGTTAACGAGGATTAA

Upstream 100 bases:

>100_bases
CCGACGCACTGCATCGAATTACGTCCGGTGAATGAGACGCCCGACAGTTGGAAATGGGATTTGAACACCATTCCCGTTCG
CATCATTCCCGTGGAACAAC

Downstream 100 bases:

>100_bases
ATGGTATTCAGAATCGCAAGCTCGCCTTATACCCATAACCAGCGCCAGACATCGCGAATCATGTTGCTGGTATTAATCGC
CGCTCTGCCGGGGATTGCCG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MLKLFSAFRKDKIWDFDGGIHPPEMKSQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLP
VHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG
GDDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVVDGEPITERVVTLTGEAISRPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS
AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSLPDNSAVIAAREARKAQARAKQAAHPMADSAISGDDPRKAAVE
AAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQTVSE
PVEPADPRKAAVAAAIARVQAKKAAQQQVVNED

Sequences:

>Translated_673_residues
MLKLFSAFRKDKIWDFDGGIHPPEMKSQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLP
VHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG
GDDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVVDGEPITERVVTLTGEAISRPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS
AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSLPDNSAVIAAREARKAQARAKQAAHPMADSAISGDDPRKAAVE
AAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQTVSE
PVEPADPRKAAVAAAIARVQAKKAAQQQVVNED
>Mature_673_residues
MLKLFSAFRKDKIWDFDGGIHPPEMKSQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLP
VHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG
GDDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVVDGEPITERVVTLTGEAISRPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS
AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSLPDNSAVIAAREARKAQARAKQAAHPMADSAISGDDPRKAAVE
AAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQTVSE
PVEPADPRKAAVAAAIARVQAKKAAQQQVVNED

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=652, Percent_Identity=88.1901840490798, Blast_Score=1067, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 72297; Mature: 72297

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLFSAFRKDKIWDFDGGIHPPEMKSQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVS
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHCCCCCCEEHH
VGDRVLRGQALTRGRGRMLPVHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIE
HHHHHHHCHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCCCCC
REGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQGGDDKITTLIINAAECEPYIT
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVVDGEPITERVVTLT
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHCC
GEAISRPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQHDKATAHHIADCIECG
HCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS
CEEEECCCCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSLPDNSAVIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHH
AHPMADSAISGDDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKAR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
KQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQTVSEPVEPADPRKAAVAAAIARVQ
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
AKKAAQQQVVNED
HHHHHHHHHCCCC
>Mature Secondary Structure
MLKLFSAFRKDKIWDFDGGIHPPEMKSQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVS
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHCCCCCCEEHH
VGDRVLRGQALTRGRGRMLPVHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIE
HHHHHHHCHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCCCCC
REGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQGGDDKITTLIINAAECEPYIT
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVVDGEPITERVVTLT
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHCC
GEAISRPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQHDKATAHHIADCIECG
HCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS
CEEEECCCCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSLPDNSAVIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHH
AHPMADSAISGDDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKAR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
KQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQTVSEPVEPADPRKAAVAAAIARVQ
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
AKKAAQQQVVNED
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA