| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is purL
Identifier: 28572944
GI number: 28572944
Start: 910537
End: 912819
Strand: Reverse
Name: purL
Synonym: TW803
Alternate gene names: 28572944
Gene position: 912819-910537 (Counterclockwise)
Preceding gene: 28572945
Following gene: 28572940
Centisome position: 98.58
GC content: 48.75
Gene sequence:
>2283_bases GTGAATATGAGCCTGCCAGCAGATCGAGATACCGCAAAAAAGCCTAGCGCGCAAAAGCCTAGCGCGCACGCACAGAACGC GACTGCCGCCGTGGACGTCACAGCACTTGGCTTGACGGAGTCTGAGTATACACAAATTTGCTCGCTGCTAAAACGCTCTC CAACAAAAAGTGAACTCGCGATCTATTCTGTTCTATGGAGCGAACATTGTTCCTACAAGTCTTCCCGTAGACACTTACGA CAGTTAGCTGACCTAACAGAGGTAACAAAAAAACATTTGCTTGTTGGAATTGGTCAGAACGCCGGAGTTGTTGATATCGG TGGTGGCTGGGCTGCAGCCTTCAAGATAGAAAGCCACAATCACCCGTCTTTTATTGAACCCTTCCAGGGTGCCGCAACGG GCATTGGCGGTATCGTGCGTGACATTATTGCCATGGGTGCAAAACCTGTTGCACTAATGGACTCGTTGCGTTTCGGCGCT GCGTCCGATCCAGACACACAGAGGGTTGCTGATGGCGTTGTCTCTGGGATCTCATTCTATGGAAACTGTCTCGGTGTGCC CAATATAGGAGGAGAAACGGCATTCGATCCCGTATATCAAGGCAATCCTTTGGTGAATGTTTTGTGCGTTGGGGTTATGC GACGGGAAAATATTCGCTTGGCGAATGCCAGCGGACCGGGAAACCTTGTAGTTCTATTTGGTGCCCCCACGGGAAGAGAT GGCATTGGCGGCGCTTCGGTCCTCGCCTCAGATTCTTTTACATCCGATGCCAAAGCTAATCGGCCGGCCGTACAAATTGG AGATCCGTTTGTAGAAAAACTACTTACCGAATGTTGCCTTGAATTGTATGCCGCTGATCTTGTGGTTGCTATTCAAGACC TTGGTGCTGCGGGTATATCTTGCGCGGCGAGTGAGCTGGCACACAACGGCCGCGTCGGTATCCGTCTGGACTTGTCTGCA GTTCCTCTCAGGGATACAACACTAGCACCTGATGAAATACTTGTATCAGAGTCTCAAGAGCGCATGATGGCCATTGTGCA TCCGGACAATTTAGAAGCATTTTTTGAAATAACAAACCGTTGGGGTATCTCAGGGGCTGTTATTGGAGAAGTGGATAATT CACAATATCTGACCGTTGTGCATGAAGGCAAAACACTGGTTAGGCTGAATCCAAAAACACTTACCGGCCCATCGTATAAC CGTCCTGTCAAAAAGCCAGCATACCTCATTCGCAGGAGCGCAGCCAATAGACTGCCTGTTACAAATGACCCACACCTACT TCGAGAAGATATTTTGCAGGTTATTTCTTGCCCAAATCTATCTGATAAAAGTGTGATTACCAATCAGTATGATCGTTATG TCCAGGGCAATACCGCACTTTGTCATCCTGATGATGCGGGGGTAATCAGGATGTATAAGAATACCGGGGTTGCACTTTCA TGTGATGGTAATTCGCGATACTCTTATCTTGATCCACACGCGGGGGCCCAGCTTGCAGTTGCGGAAGCTTACCGCAATGT ATCGGTTGTTGGGGCCACGCCCCTTGCGGTAACAAACTGTCTCAATTTTGGTAACCCAGAAAACCCAGAAGTTATGTGGC AGTTTAGGGAAACCTGTAGAGGGCTTTCTGATGCCTGTAAGCGGCTTGAGATTCCAATTACGGGGGGTAATGTTTCCTTT TACAACCAGACCGACGGTAAAGACATATTTCCCACTCCGGTGGTTGGCATTCTTGGCATTGTAGATAATCTGACCCAAAC ACTTACTTCCGGATGGAATGCGCCAGATCTCTTTATTTATCTTCTGGGTGTTACGCGACCCGAGTTTGGCGGAAGCGTTT GGGCTGATACCATGTACGGCCACATTGGCGGGGTGCCACCTAAGCTAGATTTAGCGAGAGAAAGTCGCCTGTCTAATTTG TTGGTTGCGGGTGCAAAGAAACGGGTTTTTGAGTCTGCGCATGACCTATCGGAAGGCGGTCTTATCCAGGCAATAGTTGA AAGTTGCCTTCGTCACGGTTTTGGTGCTGATATCGCTCTTGATACAATCCGTGCAACGAGCCTAACAGAGGCACTTTTTA GTGAAAGCGCTTCGCGTGTTCTTGTGTCTTGTAGATCTCAGGAGGATTTGCGTGACCTTTGCAGGAGAAATAGTTATGAA TACACCCTAATTGGCACAACACGTCACACCGGAGAGCTTACGATTTCCGAGATCGGCAAATTCACTCTGAATGAGCTCAG TGATGCTCGCCAAAAGGTCACTCGTGTCCTGTTTAGGGGATAA
Upstream 100 bases:
>100_bases CCGCCCTGACCCTGCAATCGCCCGGTAAGCCCTGCGGCATATGCTGTCTTTTACCCCAAGGATTGGCAGTCGCGATTACA GTTGCGAGGCAGGCTATTCG
Downstream 100 bases:
>100_bases GGGTAGGTTTTCCCGGAAGATACCTTTATGCACTGGCCACTAAACGGTGCGCTGTCGGCGTTTTGTTTCCGATATGATCG TCTCGAACAGGGAGCGTACA
Product: phosphoribosylformylglycinamidine synthase II
Products: NA
Alternate protein names: Phosphoribosylformylglycinamidine synthase II; FGAM synthase II
Number of amino acids: Translated: 760; Mature: 760
Protein sequence:
>760_residues MNMSLPADRDTAKKPSAQKPSAHAQNATAAVDVTALGLTESEYTQICSLLKRSPTKSELAIYSVLWSEHCSYKSSRRHLR QLADLTEVTKKHLLVGIGQNAGVVDIGGGWAAAFKIESHNHPSFIEPFQGAATGIGGIVRDIIAMGAKPVALMDSLRFGA ASDPDTQRVADGVVSGISFYGNCLGVPNIGGETAFDPVYQGNPLVNVLCVGVMRRENIRLANASGPGNLVVLFGAPTGRD GIGGASVLASDSFTSDAKANRPAVQIGDPFVEKLLTECCLELYAADLVVAIQDLGAAGISCAASELAHNGRVGIRLDLSA VPLRDTTLAPDEILVSESQERMMAIVHPDNLEAFFEITNRWGISGAVIGEVDNSQYLTVVHEGKTLVRLNPKTLTGPSYN RPVKKPAYLIRRSAANRLPVTNDPHLLREDILQVISCPNLSDKSVITNQYDRYVQGNTALCHPDDAGVIRMYKNTGVALS CDGNSRYSYLDPHAGAQLAVAEAYRNVSVVGATPLAVTNCLNFGNPENPEVMWQFRETCRGLSDACKRLEIPITGGNVSF YNQTDGKDIFPTPVVGILGIVDNLTQTLTSGWNAPDLFIYLLGVTRPEFGGSVWADTMYGHIGGVPPKLDLARESRLSNL LVAGAKKRVFESAHDLSEGGLIQAIVESCLRHGFGADIALDTIRATSLTEALFSESASRVLVSCRSQEDLRDLCRRNSYE YTLIGTTRHTGELTISEIGKFTLNELSDARQKVTRVLFRG
Sequences:
>Translated_760_residues MNMSLPADRDTAKKPSAQKPSAHAQNATAAVDVTALGLTESEYTQICSLLKRSPTKSELAIYSVLWSEHCSYKSSRRHLR QLADLTEVTKKHLLVGIGQNAGVVDIGGGWAAAFKIESHNHPSFIEPFQGAATGIGGIVRDIIAMGAKPVALMDSLRFGA ASDPDTQRVADGVVSGISFYGNCLGVPNIGGETAFDPVYQGNPLVNVLCVGVMRRENIRLANASGPGNLVVLFGAPTGRD GIGGASVLASDSFTSDAKANRPAVQIGDPFVEKLLTECCLELYAADLVVAIQDLGAAGISCAASELAHNGRVGIRLDLSA VPLRDTTLAPDEILVSESQERMMAIVHPDNLEAFFEITNRWGISGAVIGEVDNSQYLTVVHEGKTLVRLNPKTLTGPSYN RPVKKPAYLIRRSAANRLPVTNDPHLLREDILQVISCPNLSDKSVITNQYDRYVQGNTALCHPDDAGVIRMYKNTGVALS CDGNSRYSYLDPHAGAQLAVAEAYRNVSVVGATPLAVTNCLNFGNPENPEVMWQFRETCRGLSDACKRLEIPITGGNVSF YNQTDGKDIFPTPVVGILGIVDNLTQTLTSGWNAPDLFIYLLGVTRPEFGGSVWADTMYGHIGGVPPKLDLARESRLSNL LVAGAKKRVFESAHDLSEGGLIQAIVESCLRHGFGADIALDTIRATSLTEALFSESASRVLVSCRSQEDLRDLCRRNSYE YTLIGTTRHTGELTISEIGKFTLNELSDARQKVTRVLFRG >Mature_760_residues MNMSLPADRDTAKKPSAQKPSAHAQNATAAVDVTALGLTESEYTQICSLLKRSPTKSELAIYSVLWSEHCSYKSSRRHLR QLADLTEVTKKHLLVGIGQNAGVVDIGGGWAAAFKIESHNHPSFIEPFQGAATGIGGIVRDIIAMGAKPVALMDSLRFGA ASDPDTQRVADGVVSGISFYGNCLGVPNIGGETAFDPVYQGNPLVNVLCVGVMRRENIRLANASGPGNLVVLFGAPTGRD GIGGASVLASDSFTSDAKANRPAVQIGDPFVEKLLTECCLELYAADLVVAIQDLGAAGISCAASELAHNGRVGIRLDLSA VPLRDTTLAPDEILVSESQERMMAIVHPDNLEAFFEITNRWGISGAVIGEVDNSQYLTVVHEGKTLVRLNPKTLTGPSYN RPVKKPAYLIRRSAANRLPVTNDPHLLREDILQVISCPNLSDKSVITNQYDRYVQGNTALCHPDDAGVIRMYKNTGVALS CDGNSRYSYLDPHAGAQLAVAEAYRNVSVVGATPLAVTNCLNFGNPENPEVMWQFRETCRGLSDACKRLEIPITGGNVSF YNQTDGKDIFPTPVVGILGIVDNLTQTLTSGWNAPDLFIYLLGVTRPEFGGSVWADTMYGHIGGVPPKLDLARESRLSNL LVAGAKKRVFESAHDLSEGGLIQAIVESCLRHGFGADIALDTIRATSLTEALFSESASRVLVSCRSQEDLRDLCRRNSYE YTLIGTTRHTGELTISEIGKFTLNELSDARQKVTRVLFRG
Specific function: Unknown
COG id: COG0046
COG function: function code F; Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FGAMS family
Homologues:
Organism=Homo sapiens, GI31657129, Length=709, Percent_Identity=26.0930888575458, Blast_Score=123, Evalue=8e-28, Organism=Escherichia coli, GI48994899, Length=765, Percent_Identity=25.2287581699346, Blast_Score=139, Evalue=7e-34, Organism=Caenorhabditis elegans, GI17553022, Length=653, Percent_Identity=26.0336906584992, Blast_Score=105, Evalue=7e-23, Organism=Saccharomyces cerevisiae, GI6321498, Length=799, Percent_Identity=24.1551939924906, Blast_Score=128, Evalue=3e-30, Organism=Drosophila melanogaster, GI24582111, Length=637, Percent_Identity=24.9607535321821, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI24582109, Length=637, Percent_Identity=24.9607535321821, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI17137292, Length=637, Percent_Identity=24.9607535321821, Blast_Score=102, Evalue=7e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PURL_TROW8 (Q83H66)
Other databases:
- EMBL: BX251412 - RefSeq: NP_789724.1 - ProteinModelPortal: Q83H66 - SMR: Q83H66 - STRING: Q83H66 - GeneID: 1065003 - GenomeReviews: BX072543_GR - KEGG: tws:TW803 - eggNOG: COG0046 - HOGENOM: HBG311214 - OMA: YGNSFGV - PhylomeDB: Q83H66 - ProtClustDB: PRK01213 - BioCyc: TWHI218496:TW0769-MONOMER - GO: GO:0005737 - HAMAP: MF_00420 - InterPro: IPR000728 - InterPro: IPR010918 - InterPro: IPR010074 - InterPro: IPR016188 - TIGRFAMs: TIGR01736
Pfam domain/function: PF00586 AIRS; PF02769 AIRS_C; SSF56042 AIR_synth_C; SSF55326 PurM_N-like
EC number: =6.3.5.3
Molecular weight: Translated: 81740; Mature: 81740
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS00107 PROTEIN_KINASE_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMSLPADRDTAKKPSAQKPSAHAQNATAAVDVTALGLTESEYTQICSLLKRSPTKSELA CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHH IYSVLWSEHCSYKSSRRHLRQLADLTEVTKKHLLVGIGQNAGVVDIGGGWAAAFKIESHN HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEECCCEEEEEEEECCC HPSFIEPFQGAATGIGGIVRDIIAMGAKPVALMDSLRFGAASDPDTQRVADGVVSGISFY CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH GNCLGVPNIGGETAFDPVYQGNPLVNVLCVGVMRRENIRLANASGPGNLVVLFGAPTGRD HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCC GIGGASVLASDSFTSDAKANRPAVQIGDPFVEKLLTECCLELYAADLVVAIQDLGAAGIS CCCCHHEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH CAASELAHNGRVGIRLDLSAVPLRDTTLAPDEILVSESQERMMAIVHPDNLEAFFEITNR HHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCHHHHHHHHHH WGISGAVIGEVDNSQYLTVVHEGKTLVRLNPKTLTGPSYNRPVKKPAYLIRRSAANRLPV CCCCEEEEEECCCCCEEEEEECCCEEEEECCCEECCCCCCCCCCHHHHHHHHHCCCCCCC TNDPHLLREDILQVISCPNLSDKSVITNQYDRYVQGNTALCHPDDAGVIRMYKNTGVALS CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCEEEE CDGNSRYSYLDPHAGAQLAVAEAYRNVSVVGATPLAVTNCLNFGNPENPEVMWQFRETCR ECCCCCCCEECCCCCCCHHHHHHHCCEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHC GLSDACKRLEIPITGGNVSFYNQTDGKDIFPTPVVGILGIVDNLTQTLTSGWNAPDLFIY CHHHHHHHEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE LLGVTRPEFGGSVWADTMYGHIGGVPPKLDLARESRLSNLLVAGAKKRVFESAHDLSEGG EEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LIQAIVESCLRHGFGADIALDTIRATSLTEALFSESASRVLVSCRSQEDLRDLCRRNSYE HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCE YTLIGTTRHTGELTISEIGKFTLNELSDARQKVTRVLFRG EEEEECCCCCCCEEHHHHCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNMSLPADRDTAKKPSAQKPSAHAQNATAAVDVTALGLTESEYTQICSLLKRSPTKSELA CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHH IYSVLWSEHCSYKSSRRHLRQLADLTEVTKKHLLVGIGQNAGVVDIGGGWAAAFKIESHN HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEECCCEEEEEEEECCC HPSFIEPFQGAATGIGGIVRDIIAMGAKPVALMDSLRFGAASDPDTQRVADGVVSGISFY CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH GNCLGVPNIGGETAFDPVYQGNPLVNVLCVGVMRRENIRLANASGPGNLVVLFGAPTGRD HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCC GIGGASVLASDSFTSDAKANRPAVQIGDPFVEKLLTECCLELYAADLVVAIQDLGAAGIS CCCCHHEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH CAASELAHNGRVGIRLDLSAVPLRDTTLAPDEILVSESQERMMAIVHPDNLEAFFEITNR HHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCHHHHHHHHHH WGISGAVIGEVDNSQYLTVVHEGKTLVRLNPKTLTGPSYNRPVKKPAYLIRRSAANRLPV CCCCEEEEEECCCCCEEEEEECCCEEEEECCCEECCCCCCCCCCHHHHHHHHHCCCCCCC TNDPHLLREDILQVISCPNLSDKSVITNQYDRYVQGNTALCHPDDAGVIRMYKNTGVALS CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCEEEE CDGNSRYSYLDPHAGAQLAVAEAYRNVSVVGATPLAVTNCLNFGNPENPEVMWQFRETCR ECCCCCCCEECCCCCCCHHHHHHHCCEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHC GLSDACKRLEIPITGGNVSFYNQTDGKDIFPTPVVGILGIVDNLTQTLTSGWNAPDLFIY CHHHHHHHEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE LLGVTRPEFGGSVWADTMYGHIGGVPPKLDLARESRLSNLLVAGAKKRVFESAHDLSEGG EEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LIQAIVESCLRHGFGADIALDTIRATSLTEALFSESASRVLVSCRSQEDLRDLCRRNSYE HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCE YTLIGTTRHTGELTISEIGKFTLNELSDARQKVTRVLFRG EEEEECCCCCCCEEHHHHCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12606174