| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572906
Identifier: 28572906
GI number: 28572906
Start: 862538
End: 862864
Strand: Direct
Name: 28572906
Synonym: TW765
Alternate gene names: NA
Gene position: 862538-862864 (Clockwise)
Preceding gene: 28572905
Following gene: 28572908
Centisome position: 93.15
GC content: 45.26
Gene sequence:
>327_bases GTGTCGGTTATTGAACGTCTAAAGCAGAGCTATATTGTCAGTGAAATGCTTGGCAACGTGGATGACTGGATCAGGGTTGT GCAGCGTGATATCGAAGAAAATCAAGATTTGAAGGCAAGGTTTCATCAGGAAATACCGGTTCTATTCCTGAATGGTCGAC AAAACTGCTACTGGAAAGTCAATCGCGAGCGGCTGTTTGCCGATATTCTCAAGGCTATGAAGGCCCAAAAGGCGCTTGAT GAGATCCGTATTGAACTTATAAAGGCAACGAGGGGTCCTTCGTCAACAGGACCTAGTAAGAGGAAATTCAAGCGAAAGCG TAAGTGA
Upstream 100 bases:
>100_bases TTTCACGGATACTAGCACGACAAATCCTGCTGTTCAGGTCTGGATAACTCTTTTGGGCCGCAGAGGGTGCTGCCTGTGCG ATGAAGCGCTTTTGGAAGTT
Downstream 100 bases:
>100_bases TCTTAAGCCCGCGCTATGCCTCACGGCAAAAGCCTGTTGGGACCCCTAAACAGAAAAGTGCTCTCTTTAATGCTTCCCAA ACGCAAGAGTGCCATGATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MSVIERLKQSYIVSEMLGNVDDWIRVVQRDIEENQDLKARFHQEIPVLFLNGRQNCYWKVNRERLFADILKAMKAQKALD EIRIELIKATRGPSSTGPSKRKFKRKRK
Sequences:
>Translated_108_residues MSVIERLKQSYIVSEMLGNVDDWIRVVQRDIEENQDLKARFHQEIPVLFLNGRQNCYWKVNRERLFADILKAMKAQKALD EIRIELIKATRGPSSTGPSKRKFKRKRK >Mature_107_residues SVIERLKQSYIVSEMLGNVDDWIRVVQRDIEENQDLKARFHQEIPVLFLNGRQNCYWKVNRERLFADILKAMKAQKALDE IRIELIKATRGPSSTGPSKRKFKRKRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12816; Mature: 12685
Theoretical pI: Translated: 10.81; Mature: 10.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVIERLKQSYIVSEMLGNVDDWIRVVQRDIEENQDLKARFHQEIPVLFLNGRQNCYWKV CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEECCCCCEEEEE NRERLFADILKAMKAQKALDEIRIELIKATRGPSSTGPSKRKFKRKRK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC >Mature Secondary Structure SVIERLKQSYIVSEMLGNVDDWIRVVQRDIEENQDLKARFHQEIPVLFLNGRQNCYWKV HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEECCCCCEEEEE NRERLFADILKAMKAQKALDEIRIELIKATRGPSSTGPSKRKFKRKRK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA