| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572864
Identifier: 28572864
GI number: 28572864
Start: 817873
End: 818757
Strand: Direct
Name: 28572864
Synonym: TW723
Alternate gene names: NA
Gene position: 817873-818757 (Clockwise)
Preceding gene: 28572863
Following gene: 28572874
Centisome position: 88.33
GC content: 47.57
Gene sequence:
>885_bases ATGGGATACAAGAAGATAGTTTTGAAGGCAGCTACCCTGGGGCTGGGTGCTGCGGGAATATGGGCTATTTGTTTCGAGCG GAATCTGTTTACTCTTCGGCATTTTAGAATTCCGGTTCTGAAAAAGGGTAGTAAGCCCATTCGCATACTGCACCTGTCTG ATATTCATATCACATCATGTCAGGGGGGTAAGAAAAATTGGCTTCAGTCCCTTGCGCAGCTCAAGCCTGATTTTATTATC AATACAGGTGATAACTTGGGTCATGCACAAGGCTTTGGGATATTTTGCGACTCAATGCGCAGTTTCTGCGGAATACCGGG AGCCTTTGTCAATGGATCAAACGACTATTTCGAGCCGTATTTTAAGAATCCATTTGCCTATCTGTTTGGACACAGTAAGA CTAAGGCATCTGCCAAGGCACTTGATACGGATAGACTGCGCGGGTTCTTGACAGGCGAGATGAAATGGATAGATCTAAAT AATCGGCAATCACACATCAGGATAAACGGTTCCGTGATAAAGCTCATTGGAGTTGATGATCCGCACTGTGGTTACGACAA ACTTGAGGAAGTGCTGCCGGTAAGAGGCAGCTCTGATGTTGTACTCGGGCTTACGCACGCACCATACAGAAGGGTGCTTG ACGCGTACGCAAAGTCGGGTGTTCATGTTATTTTTGCCGGTCATACACACGGCGGGCAGGTAAACCTGTTTGGGGCACTA ACTACAAATTGTGACTTACCCAGATTCCAGGCAAAGGGCCTGAGCGGATGGCATTCTGAAACGAGCACCTCGTGGCTGCA CGTTTCCGCTGGTGTTGGAACATCGGTTTACGCCCCGTTTCGGTTTGCATGTAAACCTGAAGCGTCATTGATAGAGCTTG TTTAG
Upstream 100 bases:
>100_bases TACCTGTGCTATTTGTGTTGTTCGGGCAAGATTTCAGGGTTTATAGGATGCTTGTGTGCCGTAAGTATCCGCAGACTAAA ATAGTCAATGAAATTATGCA
Downstream 100 bases:
>100_bases TATCAAACGGCCATATGGCTTACTTTATCGTCTAAATACAGAGGTCTGATATCCCGGAATTGCCGCCTTGCCCAGTTATT TACCCAGTATTGACTCATTT
Product: secreted protein
Products: NA
Alternate protein names: Secreted Protein; Phosphohydrolase; Ser/Thr Protein Phosphatase; Calcineurin-Like Phosphoesterase; Secreted Phosphoesterase Protein; Ser/Thr Protein Phosphatase Family Protein; Hydrolase; Phosphoesterase; Signal Peptide; Metallophosphoesterase Domain-Containing Protein; Phosphohydrolases
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MGYKKIVLKAATLGLGAAGIWAICFERNLFTLRHFRIPVLKKGSKPIRILHLSDIHITSCQGGKKNWLQSLAQLKPDFII NTGDNLGHAQGFGIFCDSMRSFCGIPGAFVNGSNDYFEPYFKNPFAYLFGHSKTKASAKALDTDRLRGFLTGEMKWIDLN NRQSHIRINGSVIKLIGVDDPHCGYDKLEEVLPVRGSSDVVLGLTHAPYRRVLDAYAKSGVHVIFAGHTHGGQVNLFGAL TTNCDLPRFQAKGLSGWHSETSTSWLHVSAGVGTSVYAPFRFACKPEASLIELV
Sequences:
>Translated_294_residues MGYKKIVLKAATLGLGAAGIWAICFERNLFTLRHFRIPVLKKGSKPIRILHLSDIHITSCQGGKKNWLQSLAQLKPDFII NTGDNLGHAQGFGIFCDSMRSFCGIPGAFVNGSNDYFEPYFKNPFAYLFGHSKTKASAKALDTDRLRGFLTGEMKWIDLN NRQSHIRINGSVIKLIGVDDPHCGYDKLEEVLPVRGSSDVVLGLTHAPYRRVLDAYAKSGVHVIFAGHTHGGQVNLFGAL TTNCDLPRFQAKGLSGWHSETSTSWLHVSAGVGTSVYAPFRFACKPEASLIELV >Mature_293_residues GYKKIVLKAATLGLGAAGIWAICFERNLFTLRHFRIPVLKKGSKPIRILHLSDIHITSCQGGKKNWLQSLAQLKPDFIIN TGDNLGHAQGFGIFCDSMRSFCGIPGAFVNGSNDYFEPYFKNPFAYLFGHSKTKASAKALDTDRLRGFLTGEMKWIDLNN RQSHIRINGSVIKLIGVDDPHCGYDKLEEVLPVRGSSDVVLGLTHAPYRRVLDAYAKSGVHVIFAGHTHGGQVNLFGALT TNCDLPRFQAKGLSGWHSETSTSWLHVSAGVGTSVYAPFRFACKPEASLIELV
Specific function: Unknown
COG id: COG1408
COG function: function code R; Predicted phosphohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32307; Mature: 32175
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYKKIVLKAATLGLGAAGIWAICFERNLFTLRHFRIPVLKKGSKPIRILHLSDIHITSC CCHHHEEEEEHHCCCCCHHHEEEEECCCEEEEEEEECCCEECCCCCEEEEEECCEEEECC QGGKKNWLQSLAQLKPDFIINTGDNLGHAQGFGIFCDSMRSFCGIPGAFVNGSNDYFEPY CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCHH FKNPFAYLFGHSKTKASAKALDTDRLRGFLTGEMKWIDLNNRQSHIRINGSVIKLIGVDD HCCCEEEEECCCCCCCHHHHCCHHHHCEEEECCEEEEEECCCCCEEEECCCEEEEEECCC PHCGYDKLEEVLPVRGSSDVVLGLTHAPYRRVLDAYAKSGVHVIFAGHTHGGQVNLFGAL CCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEE TTNCDLPRFQAKGLSGWHSETSTSWLHVSAGVGTSVYAPFRFACKPEASLIELV ECCCCCCCHHCCCCCCCCCCCCCCEEEEECCCCCEEECCEEEECCCCCCEEECC >Mature Secondary Structure GYKKIVLKAATLGLGAAGIWAICFERNLFTLRHFRIPVLKKGSKPIRILHLSDIHITSC CHHHEEEEEHHCCCCCHHHEEEEECCCEEEEEEEECCCEECCCCCEEEEEECCEEEECC QGGKKNWLQSLAQLKPDFIINTGDNLGHAQGFGIFCDSMRSFCGIPGAFVNGSNDYFEPY CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCHH FKNPFAYLFGHSKTKASAKALDTDRLRGFLTGEMKWIDLNNRQSHIRINGSVIKLIGVDD HCCCEEEEECCCCCCCHHHHCCHHHHCEEEECCEEEEEECCCCCEEEECCCEEEEEECCC PHCGYDKLEEVLPVRGSSDVVLGLTHAPYRRVLDAYAKSGVHVIFAGHTHGGQVNLFGAL CCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEE TTNCDLPRFQAKGLSGWHSETSTSWLHVSAGVGTSVYAPFRFACKPEASLIELV ECCCCCCCHHCCCCCCCCCCCCCCEEEEECCCCCEEECCEEEECCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA