| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572776
Identifier: 28572776
GI number: 28572776
Start: 717488
End: 717835
Strand: Reverse
Name: 28572776
Synonym: TW630
Alternate gene names: NA
Gene position: 717835-717488 (Counterclockwise)
Preceding gene: 28572777
Following gene: 28572775
Centisome position: 77.53
GC content: 59.48
Gene sequence:
>348_bases TTGACCTGTGGACTTATTACGCTCCTGCCAAGCCTGCGGCCCCTGCACCTACTGAGGCTGCTGCACCATCGGCACCCAAA CCCGCTGCAGCCAAGCCTGCAGCACCTTCTAAGCCTGCTCCTGCCAGGCCTGCTGCTCCATCAGCAAAACCACCTGCACC TACTGCGGCCCCTGCACCACCCGCACCTGCTAAACCCGCCGCAGCTAAGCCTTCATCCACTGTTGCAAATACTCAGGCAA CCAAGCTTGCTCCTGGTAAACCTGGTAAGCCTACTGAGGCAACCCACGCTCCTGCCAAACCTACTCAGGCAAACCAGCCT ACACAACCACCTTCTGCACCTGCCCTGA
Upstream 100 bases:
>100_bases GGCGAGAATATCAGCTTCTGTAAGTGACTCTAAACTCGATTAGAGTGCAAGGCATTTCCTGTTTGCATTTCCTGTTTTAC TGAATGCGCTGAGTTACAAC
Downstream 100 bases:
>100_bases ATGGCCTTCCTTGCCAATGCTTTCTTGCCGGTGTTGTGGCTTTTGATTATTGACCACCTACCGCAAAAAGCAACACATTC AGTCGCGAACATGAAAAATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 115; Mature: 114
Protein sequence:
>115_residues MTCGLITLLPSLRPLHLLRLLHHRHPNPLQPSLQHLLSLLLPGLLLHQQNHLHLLRPLHHPHLLNPPQLSLHPLLQILRQ PSLLLVNLVSLLRQPTLLPNLLRQTSLHNHLLHLP
Sequences:
>Translated_115_residues MTCGLITLLPSLRPLHLLRLLHHRHPNPLQPSLQHLLSLLLPGLLLHQQNHLHLLRPLHHPHLLNPPQLSLHPLLQILRQ PSLLLVNLVSLLRQPTLLPNLLRQTSLHNHLLHLP >Mature_114_residues TCGLITLLPSLRPLHLLRLLHHRHPNPLQPSLQHLLSLLLPGLLLHQQNHLHLLRPLHHPHLLNPPQLSLHPLLQILRQP SLLLVNLVSLLRQPTLLPNLLRQTSLHNHLLHLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13229; Mature: 13098
Theoretical pI: Translated: 12.90; Mature: 12.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCGLITLLPSLRPLHLLRLLHHRHPNPLQPSLQHLLSLLLPGLLLHQQNHLHLLRPLHH CCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC PHLLNPPQLSLHPLLQILRQPSLLLVNLVSLLRQPTLLPNLLRQTSLHNHLLHLP CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TCGLITLLPSLRPLHLLRLLHHRHPNPLQPSLQHLLSLLLPGLLLHQQNHLHLLRPLHH CCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC PHLLNPPQLSLHPLLQILRQPSLLLVNLVSLLRQPTLLPNLLRQTSLHNHLLHLP CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA