Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572776

Identifier: 28572776

GI number: 28572776

Start: 717488

End: 717835

Strand: Reverse

Name: 28572776

Synonym: TW630

Alternate gene names: NA

Gene position: 717835-717488 (Counterclockwise)

Preceding gene: 28572777

Following gene: 28572775

Centisome position: 77.53

GC content: 59.48

Gene sequence:

>348_bases
TTGACCTGTGGACTTATTACGCTCCTGCCAAGCCTGCGGCCCCTGCACCTACTGAGGCTGCTGCACCATCGGCACCCAAA
CCCGCTGCAGCCAAGCCTGCAGCACCTTCTAAGCCTGCTCCTGCCAGGCCTGCTGCTCCATCAGCAAAACCACCTGCACC
TACTGCGGCCCCTGCACCACCCGCACCTGCTAAACCCGCCGCAGCTAAGCCTTCATCCACTGTTGCAAATACTCAGGCAA
CCAAGCTTGCTCCTGGTAAACCTGGTAAGCCTACTGAGGCAACCCACGCTCCTGCCAAACCTACTCAGGCAAACCAGCCT
ACACAACCACCTTCTGCACCTGCCCTGA

Upstream 100 bases:

>100_bases
GGCGAGAATATCAGCTTCTGTAAGTGACTCTAAACTCGATTAGAGTGCAAGGCATTTCCTGTTTGCATTTCCTGTTTTAC
TGAATGCGCTGAGTTACAAC

Downstream 100 bases:

>100_bases
ATGGCCTTCCTTGCCAATGCTTTCTTGCCGGTGTTGTGGCTTTTGATTATTGACCACCTACCGCAAAAAGCAACACATTC
AGTCGCGAACATGAAAAATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MTCGLITLLPSLRPLHLLRLLHHRHPNPLQPSLQHLLSLLLPGLLLHQQNHLHLLRPLHHPHLLNPPQLSLHPLLQILRQ
PSLLLVNLVSLLRQPTLLPNLLRQTSLHNHLLHLP

Sequences:

>Translated_115_residues
MTCGLITLLPSLRPLHLLRLLHHRHPNPLQPSLQHLLSLLLPGLLLHQQNHLHLLRPLHHPHLLNPPQLSLHPLLQILRQ
PSLLLVNLVSLLRQPTLLPNLLRQTSLHNHLLHLP
>Mature_114_residues
TCGLITLLPSLRPLHLLRLLHHRHPNPLQPSLQHLLSLLLPGLLLHQQNHLHLLRPLHHPHLLNPPQLSLHPLLQILRQP
SLLLVNLVSLLRQPTLLPNLLRQTSLHNHLLHLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13229; Mature: 13098

Theoretical pI: Translated: 12.90; Mature: 12.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCGLITLLPSLRPLHLLRLLHHRHPNPLQPSLQHLLSLLLPGLLLHQQNHLHLLRPLHH
CCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
PHLLNPPQLSLHPLLQILRQPSLLLVNLVSLLRQPTLLPNLLRQTSLHNHLLHLP
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TCGLITLLPSLRPLHLLRLLHHRHPNPLQPSLQHLLSLLLPGLLLHQQNHLHLLRPLHH
CCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
PHLLNPPQLSLHPLLQILRQPSLLLVNLVSLLRQPTLLPNLLRQTSLHNHLLHLP
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA