Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572758

Identifier: 28572758

GI number: 28572758

Start: 694956

End: 697502

Strand: Reverse

Name: 28572758

Synonym: TW612

Alternate gene names: NA

Gene position: 697502-694956 (Counterclockwise)

Preceding gene: 28572759

Following gene: 28572757

Centisome position: 75.33

GC content: 43.89

Gene sequence:

>2547_bases
TTGAAAGAAACATGTGTTATTGTCCTTGACTGCTATGACAAGCAGAATATCGAGGAAACTATATCGTCTCTTGAAGCAAT
TGGTAATTCTAGTGATGTATATCTTGTTTCACCCTCTGGCACTAGTATTCCAGGTATAAAAACCCTGAAAGGCTCGCAAG
TTCAGGTAATTAATTCCTTTATACACAAAAAACAATATGAGTTTTACGCGTTTATAACGGCCGGCAGCTTCCCTGCACAA
GATTGGCTCGATTGTGCATTAAAATCCTTCGACAACCGAACGGGTGTTGTTGCGTCAAGGATTGATATAAAAAATCCTCT
TACCACTGAAGTTGCAGAATCAAAGACCTGCGTGTTACCTGATGCATCGTCTTCACATAATCACATATTACGAAGCCCAG
GGTCAGCACAGACCAGCGCGTTATGCCCTTGTCGGTATGATTTTTCGTATACGGGTGGCGTATTCGAGTGGCTTAAGACA
TTTTTATCCGGCAAACTGTGTGCACGAAATAATTGCAGAGAGGTTTTTTTTGGGTCATTTGCCGGACTTGTAATGCGCGG
CGATGCATTTATTCAGGCAAAAGGCTTTGACTTTGAGGGGCCAATATCTGATATTGACCTGTTTTGGAGAATAAATCTTC
TGGGCTGGAAAGTTGCTTACGAGGAGAACAGCAGAGTTGCACTTTCCCTCATTAACTTCATTAACAATGAACGTGAATTA
GCTCTTAATTCGCCGGTTTATTCCTCAATTGCAGGACCCATAAGGGCGAAAGCATCAAATGCTCTTTGTGTAATATACAA
GAATTTGGCAAGCGAAACCATGCATACAGGGTTTATTCCAGCGATGCATTTGCTTTCTGTTTTGGCTGAAGTAGATACCC
TTCCGCGGTCAGAATCAGCAATGCCCCCGCGCTTACAGTGTGAACATGAACAACTATCAACACACGCAGCACGGAAGCAT
GACGCCCATGCTGTTCATGCCAGCGAGTCTCTATCAGGCAAATGCGATGCGGTCTTTCTAAAAACACCTGTAAATTCCTT
TGTTGACAATATTGTCGCCATTGAACGTAAAAGACAAGAAGTGCAAAAGACCCGGGTAATTCCAGACCACAATCTTTTTC
GACTTATTCAGGTATCGCAAGAACATAGTGCGGTGTTGAAGGTTTTTGGATCTGAGGTGATTCGCCGCACGCGGGTTCTT
GTCATAACACCTGACAGGGTCGGGAGATCTATGGCTGGTCCCGCTATCAGGGCTTGGAATATCTCAGAGGTTCTCTCGAG
ATTATATGAAGTGCGGCTTGTGTCAAGCGTACCTTCGGAGTCTCTCGATGCACCCTTTGAGATTTTCTATATCGGTAATA
ATCAGAGGCAAATGGCTATTCATGAAAAATGGGCAGATGTAATAGTTTTCCAGGGCCATATCCTTTCGCAATTTCCGTTG
CTTAGAAGAACAAAAAAGTTCCTGATTGCTGATGTGTATGACCCAATGCATTTAGAGCAACTTGAGCAGGCAAAAAATTC
TCCAATTGAAGTTTGGCGCGCTCAGTTTGAAGGCGCTGCAAGCGCCCTTGAGCAGCAGTTTCTTTTGGCAGATTATTTTG
TCTGCGCTTCAGAAAGGCAGCGCCACTTCTATCTTGGCCAACTTATGAGCGCTGGGAAAGTGTCTGTTGAGCATTATCAG
GAAGATCCACATCTGCGAAATCTAATTGATGTTGTTCCATTTGGATTAAGTTCAGTCTCTCCAAAGAAAACACGTGTATG
CCTGCGGGGGGTTTATCCTGGCATCGCCGAAAACGACAAAATACTTATTTGGGCCGGTGGAATATACAACTGGTTTGATA
CCGAGACTCTCATAATGGCTGTTGCAGATCTGAGTCAGCGCCGAGATTCCGTCCGGCTATTTTTCCAAGGGACGAAGCAT
CCAAATCCTGCTGTTCCGGAAATGAGTGTTGTTGCCCAATCCCGTAGTCTTGCGCAAGCTTGCAATATTTTGGATAAATA
TGTTTTTTTCAATGACACTTGGGTTGATTACGATGATAGGCAGAACTATCTTTTGGAGTCAGATGCGGGGGTAACCACTC
ATTTCGACCACGTTGAAACGACTTTTTCCTTCAGAACCAGAGTGTTGGATTATCTATGGGCCGGCCTTCCAATGGTCATT
ACAGATGGAGATGTATTTGCCCAGTATGTCAAAGAGTACAATCTCGGCTTAGTTGTTGAGCAAGGGAACGTGCGTTCCCT
TGCTGATGCCTTGGAAAAGATTCTTTTTGATCAAGACTTTATTCTTGCCTGTAAGAGAAATATAGAGGAGTTTAGACGTC
GATTTTTTTGGGAGGAAGTTTTAAGACCGCTTATCAGGAGAATTGATGTGCCACATACCTTTAAGGTTGATACGCGTACA
AAGCGTGACAGAAAGCGCATTGACAATATGCCTTGGGGGAGTAGGCGTAACCTGGCCCTTGTGCGTTACTACTACAGAGC
TGGTGGAGTCAAGATGGTCTTTCGCAAAATTGTAGACAGGATTAGATTTTTATTTGGGAGTAGATAG

Upstream 100 bases:

>100_bases
ACCGCGGGTCTTTGCCTTGTGCGCGCAAGCTCACCGATTGCCTGTAATATCGACTCGACGACCTTATGTAAGCCGCGTAC
TCCAGGGCCGGGGCTGTGAT

Downstream 100 bases:

>100_bases
GGTGTTTTTCTGGTTTACTTTTGCTTTATACATACTGTGTGGGTTTTGTATTTTTTTTACTCTTATTTCCGGCCTGCTTC
GCTATAGGCCGGCTGATTTG

Product: hypothetical protein

Products: NA

Alternate protein names: Group 1 Glycosyl Transferase; Glycosyltransferase; Diverged Glycosyltransferase Domain-Containing Protein; Glycosyl Transferase Family Protein; Family 2 Glycosyl Transferase

Number of amino acids: Translated: 848; Mature: 848

Protein sequence:

>848_residues
MKETCVIVLDCYDKQNIEETISSLEAIGNSSDVYLVSPSGTSIPGIKTLKGSQVQVINSFIHKKQYEFYAFITAGSFPAQ
DWLDCALKSFDNRTGVVASRIDIKNPLTTEVAESKTCVLPDASSSHNHILRSPGSAQTSALCPCRYDFSYTGGVFEWLKT
FLSGKLCARNNCREVFFGSFAGLVMRGDAFIQAKGFDFEGPISDIDLFWRINLLGWKVAYEENSRVALSLINFINNEREL
ALNSPVYSSIAGPIRAKASNALCVIYKNLASETMHTGFIPAMHLLSVLAEVDTLPRSESAMPPRLQCEHEQLSTHAARKH
DAHAVHASESLSGKCDAVFLKTPVNSFVDNIVAIERKRQEVQKTRVIPDHNLFRLIQVSQEHSAVLKVFGSEVIRRTRVL
VITPDRVGRSMAGPAIRAWNISEVLSRLYEVRLVSSVPSESLDAPFEIFYIGNNQRQMAIHEKWADVIVFQGHILSQFPL
LRRTKKFLIADVYDPMHLEQLEQAKNSPIEVWRAQFEGAASALEQQFLLADYFVCASERQRHFYLGQLMSAGKVSVEHYQ
EDPHLRNLIDVVPFGLSSVSPKKTRVCLRGVYPGIAENDKILIWAGGIYNWFDTETLIMAVADLSQRRDSVRLFFQGTKH
PNPAVPEMSVVAQSRSLAQACNILDKYVFFNDTWVDYDDRQNYLLESDAGVTTHFDHVETTFSFRTRVLDYLWAGLPMVI
TDGDVFAQYVKEYNLGLVVEQGNVRSLADALEKILFDQDFILACKRNIEEFRRRFFWEEVLRPLIRRIDVPHTFKVDTRT
KRDRKRIDNMPWGSRRNLALVRYYYRAGGVKMVFRKIVDRIRFLFGSR

Sequences:

>Translated_848_residues
MKETCVIVLDCYDKQNIEETISSLEAIGNSSDVYLVSPSGTSIPGIKTLKGSQVQVINSFIHKKQYEFYAFITAGSFPAQ
DWLDCALKSFDNRTGVVASRIDIKNPLTTEVAESKTCVLPDASSSHNHILRSPGSAQTSALCPCRYDFSYTGGVFEWLKT
FLSGKLCARNNCREVFFGSFAGLVMRGDAFIQAKGFDFEGPISDIDLFWRINLLGWKVAYEENSRVALSLINFINNEREL
ALNSPVYSSIAGPIRAKASNALCVIYKNLASETMHTGFIPAMHLLSVLAEVDTLPRSESAMPPRLQCEHEQLSTHAARKH
DAHAVHASESLSGKCDAVFLKTPVNSFVDNIVAIERKRQEVQKTRVIPDHNLFRLIQVSQEHSAVLKVFGSEVIRRTRVL
VITPDRVGRSMAGPAIRAWNISEVLSRLYEVRLVSSVPSESLDAPFEIFYIGNNQRQMAIHEKWADVIVFQGHILSQFPL
LRRTKKFLIADVYDPMHLEQLEQAKNSPIEVWRAQFEGAASALEQQFLLADYFVCASERQRHFYLGQLMSAGKVSVEHYQ
EDPHLRNLIDVVPFGLSSVSPKKTRVCLRGVYPGIAENDKILIWAGGIYNWFDTETLIMAVADLSQRRDSVRLFFQGTKH
PNPAVPEMSVVAQSRSLAQACNILDKYVFFNDTWVDYDDRQNYLLESDAGVTTHFDHVETTFSFRTRVLDYLWAGLPMVI
TDGDVFAQYVKEYNLGLVVEQGNVRSLADALEKILFDQDFILACKRNIEEFRRRFFWEEVLRPLIRRIDVPHTFKVDTRT
KRDRKRIDNMPWGSRRNLALVRYYYRAGGVKMVFRKIVDRIRFLFGSR
>Mature_848_residues
MKETCVIVLDCYDKQNIEETISSLEAIGNSSDVYLVSPSGTSIPGIKTLKGSQVQVINSFIHKKQYEFYAFITAGSFPAQ
DWLDCALKSFDNRTGVVASRIDIKNPLTTEVAESKTCVLPDASSSHNHILRSPGSAQTSALCPCRYDFSYTGGVFEWLKT
FLSGKLCARNNCREVFFGSFAGLVMRGDAFIQAKGFDFEGPISDIDLFWRINLLGWKVAYEENSRVALSLINFINNEREL
ALNSPVYSSIAGPIRAKASNALCVIYKNLASETMHTGFIPAMHLLSVLAEVDTLPRSESAMPPRLQCEHEQLSTHAARKH
DAHAVHASESLSGKCDAVFLKTPVNSFVDNIVAIERKRQEVQKTRVIPDHNLFRLIQVSQEHSAVLKVFGSEVIRRTRVL
VITPDRVGRSMAGPAIRAWNISEVLSRLYEVRLVSSVPSESLDAPFEIFYIGNNQRQMAIHEKWADVIVFQGHILSQFPL
LRRTKKFLIADVYDPMHLEQLEQAKNSPIEVWRAQFEGAASALEQQFLLADYFVCASERQRHFYLGQLMSAGKVSVEHYQ
EDPHLRNLIDVVPFGLSSVSPKKTRVCLRGVYPGIAENDKILIWAGGIYNWFDTETLIMAVADLSQRRDSVRLFFQGTKH
PNPAVPEMSVVAQSRSLAQACNILDKYVFFNDTWVDYDDRQNYLLESDAGVTTHFDHVETTFSFRTRVLDYLWAGLPMVI
TDGDVFAQYVKEYNLGLVVEQGNVRSLADALEKILFDQDFILACKRNIEEFRRRFFWEEVLRPLIRRIDVPHTFKVDTRT
KRDRKRIDNMPWGSRRNLALVRYYYRAGGVKMVFRKIVDRIRFLFGSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 96405; Mature: 96405

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKETCVIVLDCYDKQNIEETISSLEAIGNSSDVYLVSPSGTSIPGIKTLKGSQVQVINSF
CCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHH
IHKKQYEFYAFITAGSFPAQDWLDCALKSFDNRTGVVASRIDIKNPLTTEVAESKTCVLP
HHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCEEECC
DASSSHNHILRSPGSAQTSALCPCRYDFSYTGGVFEWLKTFLSGKLCARNNCREVFFGSF
CCCCCCCCEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
AGLVMRGDAFIQAKGFDFEGPISDIDLFWRINLLGWKVAYEENSRVALSLINFINNEREL
HHHEEECCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCHHHHHHHHHCCCCEE
ALNSPVYSSIAGPIRAKASNALCVIYKNLASETMHTGFIPAMHLLSVLAEVDTLPRSESA
EECCCHHHHHCCCHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC
MPPRLQCEHEQLSTHAARKHDAHAVHASESLSGKCDAVFLKTPVNSFVDNIVAIERKRQE
CCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
VQKTRVIPDHNLFRLIQVSQEHSAVLKVFGSEVIRRTRVLVITPDRVGRSMAGPAIRAWN
HHHHCCCCCCCCEEHEEECHHHHHHHHHHHHHHHHHCEEEEECCHHHCCCCCCCCEEECC
ISEVLSRLYEVRLVSSVPSESLDAPFEIFYIGNNQRQMAIHEKWADVIVFQGHILSQFPL
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCEEEECCCHHHHCHH
LRRTKKFLIADVYDPMHLEQLEQAKNSPIEVWRAQFEGAASALEQQFLLADYFVCASERQ
HHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RHFYLGQLMSAGKVSVEHYQEDPHLRNLIDVVPFGLSSVSPKKTRVCLRGVYPGIAENDK
CHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCE
ILIWAGGIYNWFDTETLIMAVADLSQRRDSVRLFFQGTKHPNPAVPEMSVVAQSRSLAQA
EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
CNILDKYVFFNDTWVDYDDRQNYLLESDAGVTTHFDHVETTFSFRTRVLDYLWAGLPMVI
HHHHHHHHEECCCEECCCCCCCEEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEE
TDGDVFAQYVKEYNLGLVVEQGNVRSLADALEKILFDQDFILACKRNIEEFRRRFFWEEV
ECHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LRPLIRRIDVPHTFKVDTRTKRDRKRIDNMPWGSRRNLALVRYYYRAGGVKMVFRKIVDR
HHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEEHHCCCHHHHHHHHHHH
IRFLFGSR
HHHHHCCC
>Mature Secondary Structure
MKETCVIVLDCYDKQNIEETISSLEAIGNSSDVYLVSPSGTSIPGIKTLKGSQVQVINSF
CCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHH
IHKKQYEFYAFITAGSFPAQDWLDCALKSFDNRTGVVASRIDIKNPLTTEVAESKTCVLP
HHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCEEECC
DASSSHNHILRSPGSAQTSALCPCRYDFSYTGGVFEWLKTFLSGKLCARNNCREVFFGSF
CCCCCCCCEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
AGLVMRGDAFIQAKGFDFEGPISDIDLFWRINLLGWKVAYEENSRVALSLINFINNEREL
HHHEEECCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCHHHHHHHHHCCCCEE
ALNSPVYSSIAGPIRAKASNALCVIYKNLASETMHTGFIPAMHLLSVLAEVDTLPRSESA
EECCCHHHHHCCCHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC
MPPRLQCEHEQLSTHAARKHDAHAVHASESLSGKCDAVFLKTPVNSFVDNIVAIERKRQE
CCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
VQKTRVIPDHNLFRLIQVSQEHSAVLKVFGSEVIRRTRVLVITPDRVGRSMAGPAIRAWN
HHHHCCCCCCCCEEHEEECHHHHHHHHHHHHHHHHHCEEEEECCHHHCCCCCCCCEEECC
ISEVLSRLYEVRLVSSVPSESLDAPFEIFYIGNNQRQMAIHEKWADVIVFQGHILSQFPL
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCEEEECCCHHHHCHH
LRRTKKFLIADVYDPMHLEQLEQAKNSPIEVWRAQFEGAASALEQQFLLADYFVCASERQ
HHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RHFYLGQLMSAGKVSVEHYQEDPHLRNLIDVVPFGLSSVSPKKTRVCLRGVYPGIAENDK
CHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCE
ILIWAGGIYNWFDTETLIMAVADLSQRRDSVRLFFQGTKHPNPAVPEMSVVAQSRSLAQA
EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
CNILDKYVFFNDTWVDYDDRQNYLLESDAGVTTHFDHVETTFSFRTRVLDYLWAGLPMVI
HHHHHHHHEECCCEECCCCCCCEEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEE
TDGDVFAQYVKEYNLGLVVEQGNVRSLADALEKILFDQDFILACKRNIEEFRRRFFWEEV
ECHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LRPLIRRIDVPHTFKVDTRTKRDRKRIDNMPWGSRRNLALVRYYYRAGGVKMVFRKIVDR
HHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEEHHCCCHHHHHHHHHHH
IRFLFGSR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA