| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572723
Identifier: 28572723
GI number: 28572723
Start: 628384
End: 629523
Strand: Direct
Name: 28572723
Synonym: TW575
Alternate gene names: NA
Gene position: 628384-629523 (Clockwise)
Preceding gene: 28572703
Following gene: 28572732
Centisome position: 67.86
GC content: 49.56
Gene sequence:
>1140_bases GTGGAGGGTGGCCTTCTTCCCTCGGTTGCGCTTATAGCCGCGCATGAGAGCTCCTCCAGTGCTCTTGCGGGTCTTGCTGT TTCAGCTGGCCTGATTGGGTATCTTGCGAGTAATATACCTGGCGGTATTGTCGTAAGCAGATTCGGCGAGCTGCGCGGCA TGATGATTGCGCTGAGCTGCGCGGGAATCAGTGTGCTTATAAATATCTTCTCTACAAGTGTTGCGCTGCTTACATTTGGG GTGTTTCTGAGTGGTTTTTCCTTTGGTGCGTATGGTGTTGCACGGCACTCCTTTATGACTCTTTATACTCCTTTGAAGGT CAGGGCACGGGCATTCTCAGTGCTCGGCGGAGCGTTCAGGCTCGGCGGAGCGTTGGGTACGTTTCTTGTGTCAGGTGTTG TTGTTCTGACAGGAAATGTGCGAAGCGTGTTTGTTGTGCATCTTGCTATTGTTATTCTCTTGGTCATTTTTCTGTTCCTG GTGCGGAATGTGCAGAAAACTGATAAGTCACCCAAAATGCTTGCAGAGCAGCCAAACAGTATAAAAGCTATGTGGGAAGC TGTTCAGTCTAAAAAGGGCCAGTTGATTACAATTGGTTCTGCCGCTGGAATACTTGCTGCGGCGAGGGTTAGCAGGTCGG TTATTCTGCCGCTGGTTGGATTACACGTTGGCCTTAAGCCGGAACAAATTACATTCATAATAGGTATTGGGTCAACCCTT GAGGCGTTTCTGTTCTATTCTTCTGGATATGTAATGGATAAGTGGGGGCGGGTGTGGTCCGCTGCGCCAGCATTGTTTAT GGTTGGTGGGGCCTATCTCCTCGTTTTCTTTGCCGAAAGTTATGTGGCTTTCTTGGCTATTAGCCTGTTGATGGGAATTG GTAACGCTCTTGGAAGTGGGATTATCCTAACCCTTGGGGCTGACCTTGCTGGAACATCTGATCAGACCGCATTTATAAGT GTGTGGCGTCTTGTAACCGATATTGGGCAGAGTGTTGGTCCGCTCGGTATGTCAACCCTATTGGGAATTACAAGTCTTAC CGGCGCGGCTGGGGTTATGGGTCTGACCTGCTTTGCTGCGGCTGGGATTATGATACGCTACCTGCACATTTACCTGCCCA ATAAACGAGCTAAAACCTAA
Upstream 100 bases:
>100_bases GCTATTTTGCAAAAACAGTGAGAAACGAAAGGTAAGTAACATAAAACAGCTACTCCCAACAATAATAGTGGTTTTTATCC CATCGGTTCTATCCTCTATG
Downstream 100 bases:
>100_bases CATGCACGCGCGACATGTGACATGTACGAGGGTTACAGATCGCGCGTATGGGTAACATGTCGCGCGTGCATAGGTTACGG GTAACGCACCGCAGGTAACC
Product: integral membrane transport protein
Products: NA
Alternate protein names: MFS Transporter; Facilitator Superfamily Transporter; Facilitator Transporter; MFS Permease; Transporter Protein; Arabinose Efflux Permease Family Protein; Necrosis Inducing; Multidrug Efflux Protein
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MEGGLLPSVALIAAHESSSSALAGLAVSAGLIGYLASNIPGGIVVSRFGELRGMMIALSCAGISVLINIFSTSVALLTFG VFLSGFSFGAYGVARHSFMTLYTPLKVRARAFSVLGGAFRLGGALGTFLVSGVVVLTGNVRSVFVVHLAIVILLVIFLFL VRNVQKTDKSPKMLAEQPNSIKAMWEAVQSKKGQLITIGSAAGILAAARVSRSVILPLVGLHVGLKPEQITFIIGIGSTL EAFLFYSSGYVMDKWGRVWSAAPALFMVGGAYLLVFFAESYVAFLAISLLMGIGNALGSGIILTLGADLAGTSDQTAFIS VWRLVTDIGQSVGPLGMSTLLGITSLTGAAGVMGLTCFAAAGIMIRYLHIYLPNKRAKT
Sequences:
>Translated_379_residues MEGGLLPSVALIAAHESSSSALAGLAVSAGLIGYLASNIPGGIVVSRFGELRGMMIALSCAGISVLINIFSTSVALLTFG VFLSGFSFGAYGVARHSFMTLYTPLKVRARAFSVLGGAFRLGGALGTFLVSGVVVLTGNVRSVFVVHLAIVILLVIFLFL VRNVQKTDKSPKMLAEQPNSIKAMWEAVQSKKGQLITIGSAAGILAAARVSRSVILPLVGLHVGLKPEQITFIIGIGSTL EAFLFYSSGYVMDKWGRVWSAAPALFMVGGAYLLVFFAESYVAFLAISLLMGIGNALGSGIILTLGADLAGTSDQTAFIS VWRLVTDIGQSVGPLGMSTLLGITSLTGAAGVMGLTCFAAAGIMIRYLHIYLPNKRAKT >Mature_379_residues MEGGLLPSVALIAAHESSSSALAGLAVSAGLIGYLASNIPGGIVVSRFGELRGMMIALSCAGISVLINIFSTSVALLTFG VFLSGFSFGAYGVARHSFMTLYTPLKVRARAFSVLGGAFRLGGALGTFLVSGVVVLTGNVRSVFVVHLAIVILLVIFLFL VRNVQKTDKSPKMLAEQPNSIKAMWEAVQSKKGQLITIGSAAGILAAARVSRSVILPLVGLHVGLKPEQITFIIGIGSTL EAFLFYSSGYVMDKWGRVWSAAPALFMVGGAYLLVFFAESYVAFLAISLLMGIGNALGSGIILTLGADLAGTSDQTAFIS VWRLVTDIGQSVGPLGMSTLLGITSLTGAAGVMGLTCFAAAGIMIRYLHIYLPNKRAKT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39463; Mature: 39463
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEGGLLPSVALIAAHESSSSALAGLAVSAGLIGYLASNIPGGIVVSRFGELRGMMIALSC CCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEHH AGISVLINIFSTSVALLTFGVFLSGFSFGAYGVARHSFMTLYTPLKVRARAFSVLGGAFR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LGGALGTFLVSGVVVLTGNVRSVFVVHLAIVILLVIFLFLVRNVQKTDKSPKMLAEQPNS HHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHH IKAMWEAVQSKKGQLITIGSAAGILAAARVSRSVILPLVGLHVGLKPEQITFIIGIGSTL HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHH EAFLFYSSGYVMDKWGRVWSAAPALFMVGGAYLLVFFAESYVAFLAISLLMGIGNALGSG HHHHHHCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IILTLGADLAGTSDQTAFISVWRLVTDIGQSVGPLGMSTLLGITSLTGAAGVMGLTCFAA EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AGIMIRYLHIYLPNKRAKT HHHHHHHHHHEECCCCCCC >Mature Secondary Structure MEGGLLPSVALIAAHESSSSALAGLAVSAGLIGYLASNIPGGIVVSRFGELRGMMIALSC CCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEHH AGISVLINIFSTSVALLTFGVFLSGFSFGAYGVARHSFMTLYTPLKVRARAFSVLGGAFR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LGGALGTFLVSGVVVLTGNVRSVFVVHLAIVILLVIFLFLVRNVQKTDKSPKMLAEQPNS HHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHH IKAMWEAVQSKKGQLITIGSAAGILAAARVSRSVILPLVGLHVGLKPEQITFIIGIGSTL HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHH EAFLFYSSGYVMDKWGRVWSAAPALFMVGGAYLLVFFAESYVAFLAISLLMGIGNALGSG HHHHHHCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IILTLGADLAGTSDQTAFISVWRLVTDIGQSVGPLGMSTLLGITSLTGAAGVMGLTCFAA EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AGIMIRYLHIYLPNKRAKT HHHHHHHHHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA