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The map label for this gene is rimM [H]

Identifier: 28572462

GI number: 28572462

Start: 342303

End: 342851

Strand: Direct

Name: rimM [H]

Synonym: TW306

Alternate gene names: 28572462

Gene position: 342303-342851 (Clockwise)

Preceding gene: 28572461

Following gene: 28572463

Centisome position: 36.97

GC content: 49.0

Gene sequence:

>549_bases
GTGCTCCTTAGGGTTGGCGTCCTTCTTCGGCCCTATGGTTTGCATGGCGGTCTTTTTGTGTCTGTCACGACGGATTTGCC
CGATGTGCGCTTTGCGGTTTCTGCGACCTTGTTTTGCTCCAGACAACTGACTGACGCAAGTGATACGTGCAGTGTTCTTA
CCGTGCGCGCTTTGCAGAAGAAGGTTGGTGCGGTGACTGCTAGAAATAGGTGGGTTATTTTTTTTGAAGAAGTACGGGAT
AGAACTCTGGCATCAACATTATCCGGATCACTCCTTCTGGCTGAACCCATTGAAGATTCTCGCGATTCCGAGTTGTGGTA
TGACTCTCATTTGGTTGGGATGAAAGTTACCTTGGAGTGTCGCAAGGAGCTTGGGCGTGTTGTTGGTGTGGAGCATCTTC
CAATGCAGGATCTTCTCGTCGTGGAGACAAAGGCCGGCAGCGTACTTCTTCCGTTTGTAAAATCAATAGTAACCTCTGTG
TCAGATGGCGAGATAATGGTAAACCCACCTGGTGGAATGTTCGTTTCACAAGTAGATTCTGCCTCCTAA

Upstream 100 bases:

>100_bases
TTATCGGGCGGCAGGGGAATACAGTAAAGGCACTCAGGACAGTTGCCAGGGCACTAAATCGGGGTCCTTTCATGCTTGAA
ATAGTGTCCGACGAAGAATA

Downstream 100 bases:

>100_bases
TAGACACTTGTTGCTGTGTCGGCCTATTATCTTTGTTTGTCATGCGTTGTGATTTTGTAAGTATATTTCCTGAATATTTT
GATGTCTTAGATATATCTCT

Product: 16s rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MLLRVGVLLRPYGLHGGLFVSVTTDLPDVRFAVSATLFCSRQLTDASDTCSVLTVRALQKKVGAVTARNRWVIFFEEVRD
RTLASTLSGSLLLAEPIEDSRDSELWYDSHLVGMKVTLECRKELGRVVGVEHLPMQDLLVVETKAGSVLLPFVKSIVTSV
SDGEIMVNPPGGMFVSQVDSAS

Sequences:

>Translated_182_residues
MLLRVGVLLRPYGLHGGLFVSVTTDLPDVRFAVSATLFCSRQLTDASDTCSVLTVRALQKKVGAVTARNRWVIFFEEVRD
RTLASTLSGSLLLAEPIEDSRDSELWYDSHLVGMKVTLECRKELGRVVGVEHLPMQDLLVVETKAGSVLLPFVKSIVTSV
SDGEIMVNPPGGMFVSQVDSAS
>Mature_182_residues
MLLRVGVLLRPYGLHGGLFVSVTTDLPDVRFAVSATLFCSRQLTDASDTCSVLTVRALQKKVGAVTARNRWVIFFEEVRD
RTLASTLSGSLLLAEPIEDSRDSELWYDSHLVGMKVTLECRKELGRVVGVEHLPMQDLLVVETKAGSVLLPFVKSIVTSV
SDGEIMVNPPGGMFVSQVDSAS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19837; Mature: 19837

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRVGVLLRPYGLHGGLFVSVTTDLPDVRFAVSATLFCSRQLTDASDTCSVLTVRALQK
CEEEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
KVGAVTARNRWVIFFEEVRDRTLASTLSGSLLLAEPIEDSRDSELWYDSHLVGMKVTLEC
HHCCEEECCEEEEEEHHHCCHHHHHHHCCCEEEECCCCCCCCCCEEECCEEEEEEEEHHH
RKELGRVVGVEHLPMQDLLVVETKAGSVLLPFVKSIVTSVSDGEIMVNPPGGMFVSQVDS
HHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEECCCC
AS
CC
>Mature Secondary Structure
MLLRVGVLLRPYGLHGGLFVSVTTDLPDVRFAVSATLFCSRQLTDASDTCSVLTVRALQK
CEEEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
KVGAVTARNRWVIFFEEVRDRTLASTLSGSLLLAEPIEDSRDSELWYDSHLVGMKVTLEC
HHCCEEECCEEEEEEHHHCCHHHHHHHCCCEEEECCCCCCCCCCEEECCEEEEEEEEHHH
RKELGRVVGVEHLPMQDLLVVETKAGSVLLPFVKSIVTSVSDGEIMVNPPGGMFVSQVDS
HHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEECCCC
AS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12840036 [H]