| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572403
Identifier: 28572403
GI number: 28572403
Start: 270823
End: 271998
Strand: Reverse
Name: 28572403
Synonym: TW244
Alternate gene names: NA
Gene position: 271998-270823 (Counterclockwise)
Preceding gene: 28572405
Following gene: 28572400
Centisome position: 29.38
GC content: 43.45
Gene sequence:
>1176_bases ATGATTGCGCTCTCACCAATGTCAATGGCCGCTGTGGCTGTTGCGACTTTACCAAACCTGAATGTACTACAGGTTGCCAG GGGCACCTCTGATTCACACCACGTAGACTCCATACTACGTTGTGATGATAATCGCTGGATGTTAATAAGGGTGCCACTCT CGCAGAATGCGAAAGATAAAATGGCCAGACTTGTGAAAAATTTGAGAGCACTTAGTAAGGGTGTCAGAGCGCGCTTGCCA TTTTCGATACCGAATGTTCTGGCCTATCAGCCTGTCAAACTGTCTTCGGGGATGAATATGACTCTCATTATGGATCACCC ACAAGGCTATGCATTGAGAGATATAAAGCCTGGTGAAGGTGCTGCGACTTCGATTGGCTGGGCAATAGCAGCGATTCATA ATCTGCCGAGCGGTCTTCTAATATCTGCTGGGTACACACACAAAACAGCTCAGGATTGCCGTTACGAAGTTATAGATTTT GTTGATAAGGCAAATGCAACGAATATGTTGCCAGGGTCCCTCAAAGAAAAATGGGAGACCCTGGTAGAAGATGAAGACCT GTGGAAATTTCAAACTACAGTCGTTAAAAAAAATTTCTCGATGGATTCATTTCGCTTTCAAGATAATCAGGAGGGCGAAA GCTCGGTATGCGCAATCCTGGAATGGGAAGATGCATCTATTGATGACCCTGCCTATGATTTGCATTGGCTTAATCAACTG TCTCATGAAAGTGCAGAAAGCATACTAAAGGCATATGAAGCCTTTAGTACAACCACTCATGATAGAGGCTGCCTGGAGCG TGCAAAGCTGTATGCAGAGCTTGATATAGCACGCATTCTAATCGATGGAGTTAGAGAAGAAAAGCATGAACTCATTGATA TGGCAAAGCGTCTTCTCTTGGAATTGGATCGCACAAGTGCGCAAGAAGATACTCCTAAACAAGCCATACACAAGGCTGAA GGTCTGCTTGAGAATGCGCAGAATCTGTCATTTGAACAACAAAGGTCATATGAAATACAGTCTGATGACGTAAATGCATA TTCTGACGAAGAGACATACAAAAGCGATCAGGTGTCAGATAGTGGGATATCTGAGAATCTTCGGAATATTGAAGAATTCC TTGGCAGTGCAAAAACAAACACTGAAGAGGAAAATAGTGAAGCAAAAAATGAATAG
Upstream 100 bases:
>100_bases GAAAAAACATCAATTGTCAATTATTTCCCATCAAAAACATTGCCAATATTTGCGTGGCTGCGCCCTCAATTCACAAAAAA GTCTTAGCCTTTTAAGGGTC
Downstream 100 bases:
>100_bases TTTAAACATCACCATGGCTTTTTCTATGAGAAAAGGTCAGACAGAAATCCCGGCATCTTACCAAGCTCATCAACAGTGTA TGGCCTAACCTTGATGGTTC
Product: transferase
Products: NA
Alternate protein names: Phosphotransferase; Macrolide 2-Phosphotransferase; Macrolide 2-Phosphotransferase-Like Protein; Macrolide Phosphotransferase; Aminoglycoside Phosphotransferase-Like Protein; Phosphotransferase Family Protein
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MIALSPMSMAAVAVATLPNLNVLQVARGTSDSHHVDSILRCDDNRWMLIRVPLSQNAKDKMARLVKNLRALSKGVRARLP FSIPNVLAYQPVKLSSGMNMTLIMDHPQGYALRDIKPGEGAATSIGWAIAAIHNLPSGLLISAGYTHKTAQDCRYEVIDF VDKANATNMLPGSLKEKWETLVEDEDLWKFQTTVVKKNFSMDSFRFQDNQEGESSVCAILEWEDASIDDPAYDLHWLNQL SHESAESILKAYEAFSTTTHDRGCLERAKLYAELDIARILIDGVREEKHELIDMAKRLLLELDRTSAQEDTPKQAIHKAE GLLENAQNLSFEQQRSYEIQSDDVNAYSDEETYKSDQVSDSGISENLRNIEEFLGSAKTNTEEENSEAKNE
Sequences:
>Translated_391_residues MIALSPMSMAAVAVATLPNLNVLQVARGTSDSHHVDSILRCDDNRWMLIRVPLSQNAKDKMARLVKNLRALSKGVRARLP FSIPNVLAYQPVKLSSGMNMTLIMDHPQGYALRDIKPGEGAATSIGWAIAAIHNLPSGLLISAGYTHKTAQDCRYEVIDF VDKANATNMLPGSLKEKWETLVEDEDLWKFQTTVVKKNFSMDSFRFQDNQEGESSVCAILEWEDASIDDPAYDLHWLNQL SHESAESILKAYEAFSTTTHDRGCLERAKLYAELDIARILIDGVREEKHELIDMAKRLLLELDRTSAQEDTPKQAIHKAE GLLENAQNLSFEQQRSYEIQSDDVNAYSDEETYKSDQVSDSGISENLRNIEEFLGSAKTNTEEENSEAKNE >Mature_391_residues MIALSPMSMAAVAVATLPNLNVLQVARGTSDSHHVDSILRCDDNRWMLIRVPLSQNAKDKMARLVKNLRALSKGVRARLP FSIPNVLAYQPVKLSSGMNMTLIMDHPQGYALRDIKPGEGAATSIGWAIAAIHNLPSGLLISAGYTHKTAQDCRYEVIDF VDKANATNMLPGSLKEKWETLVEDEDLWKFQTTVVKKNFSMDSFRFQDNQEGESSVCAILEWEDASIDDPAYDLHWLNQL SHESAESILKAYEAFSTTTHDRGCLERAKLYAELDIARILIDGVREEKHELIDMAKRLLLELDRTSAQEDTPKQAIHKAE GLLENAQNLSFEQQRSYEIQSDDVNAYSDEETYKSDQVSDSGISENLRNIEEFLGSAKTNTEEENSEAKNE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43853; Mature: 43853
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALSPMSMAAVAVATLPNLNVLQVARGTSDSHHVDSILRCDDNRWMLIRVPLSQNAKDK CEECCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHEECCCCEEEEEECCCCCHHHH MARLVKNLRALSKGVRARLPFSIPNVLAYQPVKLSSGMNMTLIMDHPQGYALRDIKPGEG HHHHHHHHHHHHHHHHEECCCCCCCHHEECCEEECCCCCEEEEEECCCCCEECCCCCCCC AATSIGWAIAAIHNLPSGLLISAGYTHKTAQDCRYEVIDFVDKANATNMLPGSLKEKWET CHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH LVEDEDLWKFQTTVVKKNFSMDSFRFQDNQEGESSVCAILEWEDASIDDPAYDLHWLNQL HHCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH SHESAESILKAYEAFSTTTHDRGCLERAKLYAELDIARILIDGVREEKHELIDMAKRLLL HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELDRTSAQEDTPKQAIHKAEGLLENAQNLSFEQQRSYEIQSDDVNAYSDEETYKSDQVSD HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHCCCCCCC SGISENLRNIEEFLGSAKTNTEEENSEAKNE CCHHHHHHHHHHHHCCCCCCCCHHCHHCCCC >Mature Secondary Structure MIALSPMSMAAVAVATLPNLNVLQVARGTSDSHHVDSILRCDDNRWMLIRVPLSQNAKDK CEECCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHEECCCCEEEEEECCCCCHHHH MARLVKNLRALSKGVRARLPFSIPNVLAYQPVKLSSGMNMTLIMDHPQGYALRDIKPGEG HHHHHHHHHHHHHHHHEECCCCCCCHHEECCEEECCCCCEEEEEECCCCCEECCCCCCCC AATSIGWAIAAIHNLPSGLLISAGYTHKTAQDCRYEVIDFVDKANATNMLPGSLKEKWET CHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH LVEDEDLWKFQTTVVKKNFSMDSFRFQDNQEGESSVCAILEWEDASIDDPAYDLHWLNQL HHCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH SHESAESILKAYEAFSTTTHDRGCLERAKLYAELDIARILIDGVREEKHELIDMAKRLLL HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELDRTSAQEDTPKQAIHKAEGLLENAQNLSFEQQRSYEIQSDDVNAYSDEETYKSDQVSD HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHCCCCCCC SGISENLRNIEEFLGSAKTNTEEENSEAKNE CCHHHHHHHHHHHHCCCCCCCCHHCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA