| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572343
Identifier: 28572343
GI number: 28572343
Start: 223106
End: 223651
Strand: Direct
Name: 28572343
Synonym: TW181
Alternate gene names: NA
Gene position: 223106-223651 (Clockwise)
Preceding gene: 28572342
Following gene: 28572344
Centisome position: 24.1
GC content: 48.9
Gene sequence:
>546_bases ATGGTGATGAGTGTGGTTAAAATGAGGATTCTTGCCGCATTGCTAACAATCCCTTTAATGTTTCTGATCGCAATCGGGCC TGTTAGCGCGGAGACGCAGCACGTACAAGAAACAGCCATAAGGTTGACAGCTGATGACACAAACCAAATAATCAAAGAAC TAGAACAAGCAGGATTCACCAAACAAGTAACAGGTAACAAGAGACAAGAAACAATAACCCTAACCAAGGATGGTGTAACT GTAACCCTTACACATGTAACACAACAGACACAGACAAGACTTTCCTGGGGTGATGACCCATGGGGTTTCTACATAAAACT GGAATGGCATGAACAAGTTGCCCTTGCTGCAGGCACTCTTGCCGCTGGTGGCGGTGCCGGCCTGGCCCTTAAGGCCGCTC TAAAAATAGCCGTGAAGGCAGGCACCGCATTTCTGGCTGGCCTGGAGGTGGTAGACAAGTTGAGTGACATCATTGGCGCA GGGCCCTGCCCTCCCTTCCAACCCCGCTACATCCGCTTTGATCCCTTCAGAACCAAATGCAATTAA
Upstream 100 bases:
>100_bases TTTATGTGTTAAATCAGGTGTTACAATGCGTGGACCATGTGTTAAAATGTAGGCGTCCATTACAGAGAGAGGGCGAGTCT GTAATGATTGAATATGTGTA
Downstream 100 bases:
>100_bases CCCAGGTGGCTTTGTTGCAAGCGTATGTAATGCACTTCGTGCAACTCGCCTGCTGTGGGTGCTGACGCGATGAACAGACA ATCATCCTTCTTTCCCCTCC
Product: secreted protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 181
Protein sequence:
>181_residues MVMSVVKMRILAALLTIPLMFLIAIGPVSAETQHVQETAIRLTADDTNQIIKELEQAGFTKQVTGNKRQETITLTKDGVT VTLTHVTQQTQTRLSWGDDPWGFYIKLEWHEQVALAAGTLAAGGGAGLALKAALKIAVKAGTAFLAGLEVVDKLSDIIGA GPCPPFQPRYIRFDPFRTKCN
Sequences:
>Translated_181_residues MVMSVVKMRILAALLTIPLMFLIAIGPVSAETQHVQETAIRLTADDTNQIIKELEQAGFTKQVTGNKRQETITLTKDGVT VTLTHVTQQTQTRLSWGDDPWGFYIKLEWHEQVALAAGTLAAGGGAGLALKAALKIAVKAGTAFLAGLEVVDKLSDIIGA GPCPPFQPRYIRFDPFRTKCN >Mature_181_residues MVMSVVKMRILAALLTIPLMFLIAIGPVSAETQHVQETAIRLTADDTNQIIKELEQAGFTKQVTGNKRQETITLTKDGVT VTLTHVTQQTQTRLSWGDDPWGFYIKLEWHEQVALAAGTLAAGGGAGLALKAALKIAVKAGTAFLAGLEVVDKLSDIIGA GPCPPFQPRYIRFDPFRTKCN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19589; Mature: 19589
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVMSVVKMRILAALLTIPLMFLIAIGPVSAETQHVQETAIRLTADDTNQIIKELEQAGFT CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEECCCHHHHHHHHHHCCCE KQVTGNKRQETITLTKDGVTVTLTHVTQQTQTRLSWGDDPWGFYIKLEWHEQVALAAGTL EECCCCCCCEEEEEEECCEEEEEEEHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHCCC AAGGGAGLALKAALKIAVKAGTAFLAGLEVVDKLSDIIGAGPCPPFQPRYIRFDPFRTKC CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC N C >Mature Secondary Structure MVMSVVKMRILAALLTIPLMFLIAIGPVSAETQHVQETAIRLTADDTNQIIKELEQAGFT CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEECCCHHHHHHHHHHCCCE KQVTGNKRQETITLTKDGVTVTLTHVTQQTQTRLSWGDDPWGFYIKLEWHEQVALAAGTL EECCCCCCCEEEEEEECCEEEEEEEHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHCCC AAGGGAGLALKAALKIAVKAGTAFLAGLEVVDKLSDIIGAGPCPPFQPRYIRFDPFRTKC CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC N C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA