Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572304

Identifier: 28572304

GI number: 28572304

Start: 152950

End: 153696

Strand: Direct

Name: 28572304

Synonym: TW141

Alternate gene names: NA

Gene position: 152950-153696 (Clockwise)

Preceding gene: 28572303

Following gene: 28572305

Centisome position: 16.52

GC content: 44.31

Gene sequence:

>747_bases
ATGAAGATTCGATCCAAATGGTTTCCAGACACTCGTATATTGATCGGCCTTGCCCTAATTGCGGCATCATTCATCGGTGT
TTTTTTTGTTATAAAAACAAATAATTCCAAATCTCAGGTGTATGTGGCAACAAGACCTCTCTCGATTGGTGACAAATTTG
ATGCCAAGCAATTTTCTATTGTCGAGGCAAATCTCGGTGCGAATCTTGATAAATACATCACCCCGGGCAGCCTACCGAAC
GCTGTTTTCAATCGACCAATTATGCCCGGGGAGTTTCTTCCGAAATCAGCACTCGTACCCGTGATTGATAAGGATATTGT
TGCGGTTGTGCTTCGCATAGCGGGAGATTTACCGGGTGATGTAAAAGAGGGTGATCTTGTTGATGTGTGGGCGGCGGTGA
AAATAAAAGAGGAAGGCTTTTGGCAGTCTGAACTAATTGCAAAAACACTTAGGGTGAGTCGTGTCATTGTTTCTACAAGC
CAGTTTGACCCCCGAGGCACAACAAAAGTTGAAGTTCAGGCCAGTAGAGACCGCCTGTCATACTTACTAAATGCAATTGC
AAATCAGGATAAAGTATCAATTGTCAGGGCATCTCACAAAGAGATTGAGTTGCTTAGATCTGCCTCCACACCGCGCACCC
TCGATGAACAAGACAAACAGAATGTTGGAGAAACACCTGATACTAATCCTCGCGGTCCGGATGAAAAAGATTCTAATTCA
GAGAGCATACACGAGGGTCACGAATAG

Upstream 100 bases:

>100_bases
ATTTAATTTTTAGAGATTTTTGCATTGATATTGGTGAGATTCAAACTGAAGCGAGAATGCGCTCTTGAGTAGATTTCCCA
GGTAATTCGAGAGAGGAAGT

Downstream 100 bases:

>100_bases
ACAATCTAATGGGTAAAACAATTGCTATATGGGGGCCGGCTGGGTCACCTGGGCGAACAACGCTGTCGATAAATATCGCT
GCAACACTGGCCTCTTATGG

Product: membrane/secreted protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKIRSKWFPDTRILIGLALIAASFIGVFFVIKTNNSKSQVYVATRPLSIGDKFDAKQFSIVEANLGANLDKYITPGSLPN
AVFNRPIMPGEFLPKSALVPVIDKDIVAVVLRIAGDLPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRVSRVIVSTS
QFDPRGTTKVEVQASRDRLSYLLNAIANQDKVSIVRASHKEIELLRSASTPRTLDEQDKQNVGETPDTNPRGPDEKDSNS
ESIHEGHE

Sequences:

>Translated_248_residues
MKIRSKWFPDTRILIGLALIAASFIGVFFVIKTNNSKSQVYVATRPLSIGDKFDAKQFSIVEANLGANLDKYITPGSLPN
AVFNRPIMPGEFLPKSALVPVIDKDIVAVVLRIAGDLPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRVSRVIVSTS
QFDPRGTTKVEVQASRDRLSYLLNAIANQDKVSIVRASHKEIELLRSASTPRTLDEQDKQNVGETPDTNPRGPDEKDSNS
ESIHEGHE
>Mature_248_residues
MKIRSKWFPDTRILIGLALIAASFIGVFFVIKTNNSKSQVYVATRPLSIGDKFDAKQFSIVEANLGANLDKYITPGSLPN
AVFNRPIMPGEFLPKSALVPVIDKDIVAVVLRIAGDLPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRVSRVIVSTS
QFDPRGTTKVEVQASRDRLSYLLNAIANQDKVSIVRASHKEIELLRSASTPRTLDEQDKQNVGETPDTNPRGPDEKDSNS
ESIHEGHE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27351; Mature: 27351

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRSKWFPDTRILIGLALIAASFIGVFFVIKTNNSKSQVYVATRPLSIGDKFDAKQFSI
CCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEE
VEANLGANLDKYITPGSLPNAVFNRPIMPGEFLPKSALVPVIDKDIVAVVLRIAGDLPGD
EEECCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
VKEGDLVDVWAAVKIKEEGFWQSELIAKTLRVSRVIVSTSQFDPRGTTKVEVQASRDRLS
CCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEECHHHHH
YLLNAIANQDKVSIVRASHKEIELLRSASTPRTLDEQDKQNVGETPDTNPRGPDEKDSNS
HHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
ESIHEGHE
CCCCCCCC
>Mature Secondary Structure
MKIRSKWFPDTRILIGLALIAASFIGVFFVIKTNNSKSQVYVATRPLSIGDKFDAKQFSI
CCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEE
VEANLGANLDKYITPGSLPNAVFNRPIMPGEFLPKSALVPVIDKDIVAVVLRIAGDLPGD
EEECCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
VKEGDLVDVWAAVKIKEEGFWQSELIAKTLRVSRVIVSTSQFDPRGTTKVEVQASRDRLS
CCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEECHHHHH
YLLNAIANQDKVSIVRASHKEIELLRSASTPRTLDEQDKQNVGETPDTNPRGPDEKDSNS
HHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
ESIHEGHE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA