| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
Click here to switch to the map view.
The map label for this gene is 28572305
Identifier: 28572305
GI number: 28572305
Start: 153705
End: 154487
Strand: Direct
Name: 28572305
Synonym: TW142
Alternate gene names: NA
Gene position: 153705-154487 (Clockwise)
Preceding gene: 28572304
Following gene: 28572306
Centisome position: 16.6
GC content: 45.72
Gene sequence:
>783_bases ATGGGTAAAACAATTGCTATATGGGGGCCGGCTGGGTCACCTGGGCGAACAACGCTGTCGATAAATATCGCTGCAACACT GGCCTCTTATGGCAAGAAAGTTATTTTAATTGACCTAGACACTTTTGGTGGGGTTGTCAGTATATATTTAGGGCTTGATG ATCAGAAGTCTGGGCTGGCTGCTATATGCTACAGGGCTGACAGCAGATCATTTACACCCGAAGATCTTTTAAATATCGCC ATCAAGGTTCCGATCCGCGGAGGATTGTTCTATTTTCTAAGTGGTATTGCGCATCATTCCAGGTGGCCTGAAATCAATCA ACCCTCACTACTTAGAGTAATAGGATCGGCAAAAAGCGCATTTGATTATGTGGTTATGGATCTTAGTTTTGCACTTGACA GCGTTGGGCAGGACACTCGCGGCCGCCTAAATTACACTCTTATGGGTTCAGGCGATTTTCTGGTTATGGTCGGCCGCGGC GACCCTATTGGAATATGTCGTTTTATTAGGGCTTGGCCAGAGGTGCCAAAGGCACAAAATGGCAGATCGTTATCAATAAT TCCCGTTATAAACATGGTCAGGCATACCGCTGTCGGGTCACGTCCCACCAAACAGCTGCGCGAAGTAATTTGCGAATACA CGTCTTTTCAGCAGGTATGGCAGATCGATTTTGATCAAAAGGTTTGTGATGCTCTTTTATTGCGCGGAAAAACTATTGTT GACTGTATGCAAAACAGTTCTGTTGCAATGCAGATCGCCTCAATTGGACGGGTGCTTCAATAG
Upstream 100 bases:
>100_bases AACAGAATGTTGGAGAAACACCTGATACTAATCCTCGCGGTCCGGATGAAAAAGATTCTAATTCAGAGAGCATACACGAG GGTCACGAATAGACAATCTA
Downstream 100 bases:
>100_bases GGTTCACTTACTCCCAAGATACCCTATAATTATCACATGTCAGCATTTCACTCGAAAGTATCTCCGCATGTATCTAGTGT TGTACCTACAACTAATCTCA
Product: regulator
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MGKTIAIWGPAGSPGRTTLSINIAATLASYGKKVILIDLDTFGGVVSIYLGLDDQKSGLAAICYRADSRSFTPEDLLNIA IKVPIRGGLFYFLSGIAHHSRWPEINQPSLLRVIGSAKSAFDYVVMDLSFALDSVGQDTRGRLNYTLMGSGDFLVMVGRG DPIGICRFIRAWPEVPKAQNGRSLSIIPVINMVRHTAVGSRPTKQLREVICEYTSFQQVWQIDFDQKVCDALLLRGKTIV DCMQNSSVAMQIASIGRVLQ
Sequences:
>Translated_260_residues MGKTIAIWGPAGSPGRTTLSINIAATLASYGKKVILIDLDTFGGVVSIYLGLDDQKSGLAAICYRADSRSFTPEDLLNIA IKVPIRGGLFYFLSGIAHHSRWPEINQPSLLRVIGSAKSAFDYVVMDLSFALDSVGQDTRGRLNYTLMGSGDFLVMVGRG DPIGICRFIRAWPEVPKAQNGRSLSIIPVINMVRHTAVGSRPTKQLREVICEYTSFQQVWQIDFDQKVCDALLLRGKTIV DCMQNSSVAMQIASIGRVLQ >Mature_259_residues GKTIAIWGPAGSPGRTTLSINIAATLASYGKKVILIDLDTFGGVVSIYLGLDDQKSGLAAICYRADSRSFTPEDLLNIAI KVPIRGGLFYFLSGIAHHSRWPEINQPSLLRVIGSAKSAFDYVVMDLSFALDSVGQDTRGRLNYTLMGSGDFLVMVGRGD PIGICRFIRAWPEVPKAQNGRSLSIIPVINMVRHTAVGSRPTKQLREVICEYTSFQQVWQIDFDQKVCDALLLRGKTIVD CMQNSSVAMQIASIGRVLQ
Specific function: Unknown
COG id: COG1192
COG function: function code D; ATPases involved in chromosome partitioning
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28427; Mature: 28296
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKTIAIWGPAGSPGRTTLSINIAATLASYGKKVILIDLDTFGGVVSIYLGLDDQKSGLA CCCEEEEECCCCCCCCEEEEEEEEEEHHHHCCEEEEEEECCCCCEEEEEEECCCCCCCEE AICYRADSRSFTPEDLLNIAIKVPIRGGLFYFLSGIAHHSRWPEINQPSLLRVIGSAKSA EEEEECCCCCCCHHHHEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHH FDYVVMDLSFALDSVGQDTRGRLNYTLMGSGDFLVMVGRGDPIGICRFIRAWPEVPKAQN HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHCCCCCCCCC GRSLSIIPVINMVRHTAVGSRPTKQLREVICEYTSFQQVWQIDFDQKVCDALLLRGKTIV CCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHEECCCCHHHHHHHHHCCCHHH DCMQNSSVAMQIASIGRVLQ HHHCCCHHEEHHHHHHHHCC >Mature Secondary Structure GKTIAIWGPAGSPGRTTLSINIAATLASYGKKVILIDLDTFGGVVSIYLGLDDQKSGLA CCEEEEECCCCCCCCEEEEEEEEEEHHHHCCEEEEEEECCCCCEEEEEEECCCCCCCEE AICYRADSRSFTPEDLLNIAIKVPIRGGLFYFLSGIAHHSRWPEINQPSLLRVIGSAKSA EEEEECCCCCCCHHHHEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHH FDYVVMDLSFALDSVGQDTRGRLNYTLMGSGDFLVMVGRGDPIGICRFIRAWPEVPKAQN HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHCCCCCCCCC GRSLSIIPVINMVRHTAVGSRPTKQLREVICEYTSFQQVWQIDFDQKVCDALLLRGKTIV CCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHEECCCCHHHHHHHHHCCCHHH DCMQNSSVAMQIASIGRVLQ HHHCCCHHEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA