| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572237
Identifier: 28572237
GI number: 28572237
Start: 57921
End: 58916
Strand: Reverse
Name: 28572237
Synonym: TW067
Alternate gene names: NA
Gene position: 58916-57921 (Counterclockwise)
Preceding gene: 28572238
Following gene: 28572236
Centisome position: 6.36
GC content: 47.19
Gene sequence:
>996_bases ATGTTCGGTAGGAAGTTACTTGGTGCGCTTGTTGCGCTCTCTCTATTGACAGGCTGTTTTGGCGGTAAAGGTGACTCTGA GTCGTCTTCTGTTTTGTCAAAAGTTGAGACGGTGTTTGGTGAAGTTACCATACCAAGACCAAAGGGTCATGATCTTAGGG TTGTAGCCCTAGGGCGGGCTGATGCTGAAGCAGCCCTTGCTGTGGGAATAAAGCCTGTTGCGGTTCTTGATGCATTCAAT ATCGGCGGTAAGGGTGTTGGCCCTTGGGCCGAGGGGCTGTTTGGTGATGTGAAGCCAACGGTTATGTCTTTTTCAACAGA TGGATTGAACTGGGAACAAATAAAGGCATTCAAGCCGGATGTTATTTTGGATGTCCGAAGCAAAAACGATGAAAAAACTT ATAAGCGGTTGAGTCAGATTGCCCCAACGGTATATGGACCAAAAAACTCCAAGGACTACCAGCCATACCAGATTCCCTGG AGGGATCAGCAAAGGCAGGTTGCCAAGGCTCTTGGGCGCGTAAAAGAGGGTGAAGAGGCTATCAAGAAAACTGAGAAAGC CATTAAAGATGCTCAGGATCCGCTCTATAGGGGATTAAAAGCTGCCCTTGTTGTGCAGAGACCCTCAGGCTACGGCGTGT TTGCGGAATCTACGAGACAGTGGGATCTTATTAGAGAATTGGGCTTTACGCTTGAGCCACGGGTGACTGAGCTCTTTGAC GGGCGTCACGCCGGAAAAGATATTCCCTCGGGTAAGTTAAACCTAATTGACACGGATGTGATTGTCGTAACAGTTAAGCG CGGGATTAGAAAAGCAGCTAATCACAATGATCCTCTTATTGCTTCTCTAAAGGCCTCAAAAGAGGGAAGGATCATATACG GGTCTGATGAATTCAATCTGGCTCTTATTGCGGGTTCAGTACTCAGTATTCCTGAAGCAATAAAGTTCCTTAGCGATAAG CTGCGCGAGATTGCCAAGAAGCTTCGTAATAAGTGA
Upstream 100 bases:
>100_bases AACCCTTTACTTTCTTTTGTCTAGCTACTAGCCTGGTATATGGCGAATAGGCGGATGTGTTGATTTGTAAGGATAAGTTG AAATAACAAATAGGAGGGGT
Downstream 100 bases:
>100_bases ACTGGCCTCAAGGTACATTGGGTGCCTTGAATACTGCGCTTTCGTGCGTGGCCTGGATTATTCCTTTGGGTGTGAGACAG AATCGTGTTGTTCTGAGATT
Product: iron-siderophore binding lipoprotein
Products: NA
Alternate protein names: ABC-Type Fe3+-Siderophores Transport System; Periplasmic IRON-Transport Lipoprotein
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MFGRKLLGALVALSLLTGCFGGKGDSESSSVLSKVETVFGEVTIPRPKGHDLRVVALGRADAEAALAVGIKPVAVLDAFN IGGKGVGPWAEGLFGDVKPTVMSFSTDGLNWEQIKAFKPDVILDVRSKNDEKTYKRLSQIAPTVYGPKNSKDYQPYQIPW RDQQRQVAKALGRVKEGEEAIKKTEKAIKDAQDPLYRGLKAALVVQRPSGYGVFAESTRQWDLIRELGFTLEPRVTELFD GRHAGKDIPSGKLNLIDTDVIVVTVKRGIRKAANHNDPLIASLKASKEGRIIYGSDEFNLALIAGSVLSIPEAIKFLSDK LREIAKKLRNK
Sequences:
>Translated_331_residues MFGRKLLGALVALSLLTGCFGGKGDSESSSVLSKVETVFGEVTIPRPKGHDLRVVALGRADAEAALAVGIKPVAVLDAFN IGGKGVGPWAEGLFGDVKPTVMSFSTDGLNWEQIKAFKPDVILDVRSKNDEKTYKRLSQIAPTVYGPKNSKDYQPYQIPW RDQQRQVAKALGRVKEGEEAIKKTEKAIKDAQDPLYRGLKAALVVQRPSGYGVFAESTRQWDLIRELGFTLEPRVTELFD GRHAGKDIPSGKLNLIDTDVIVVTVKRGIRKAANHNDPLIASLKASKEGRIIYGSDEFNLALIAGSVLSIPEAIKFLSDK LREIAKKLRNK >Mature_331_residues MFGRKLLGALVALSLLTGCFGGKGDSESSSVLSKVETVFGEVTIPRPKGHDLRVVALGRADAEAALAVGIKPVAVLDAFN IGGKGVGPWAEGLFGDVKPTVMSFSTDGLNWEQIKAFKPDVILDVRSKNDEKTYKRLSQIAPTVYGPKNSKDYQPYQIPW RDQQRQVAKALGRVKEGEEAIKKTEKAIKDAQDPLYRGLKAALVVQRPSGYGVFAESTRQWDLIRELGFTLEPRVTELFD GRHAGKDIPSGKLNLIDTDVIVVTVKRGIRKAANHNDPLIASLKASKEGRIIYGSDEFNLALIAGSVLSIPEAIKFLSDK LREIAKKLRNK
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36150; Mature: 36150
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGRKLLGALVALSLLTGCFGGKGDSESSSVLSKVETVFGEVTIPRPKGHDLRVVALGRA CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEECCCCCCCCEEEEEECCC DAEAALAVGIKPVAVLDAFNIGGKGVGPWAEGLFGDVKPTVMSFSTDGLNWEQIKAFKPD CCHHHHHHCCCHHHEEEECCCCCCCCCHHHHHHCCCCCCHHEEECCCCCCHHHHHHCCCC VILDVRSKNDEKTYKRLSQIAPTVYGPKNSKDYQPYQIPWRDQQRQVAKALGRVKEGEEA EEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH IKKTEKAIKDAQDPLYRGLKAALVVQRPSGYGVFAESTRQWDLIRELGFTLEPRVTELFD HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCHHHHHHHHCCCCCCCCHHHHHC GRHAGKDIPSGKLNLIDTDVIVVTVKRGIRKAANHNDPLIASLKASKEGRIIYGSDEFNL CCCCCCCCCCCCEEEEECCEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCEE ALIAGSVLSIPEAIKFLSDKLREIAKKLRNK EEECCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFGRKLLGALVALSLLTGCFGGKGDSESSSVLSKVETVFGEVTIPRPKGHDLRVVALGRA CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEECCCCCCCCEEEEEECCC DAEAALAVGIKPVAVLDAFNIGGKGVGPWAEGLFGDVKPTVMSFSTDGLNWEQIKAFKPD CCHHHHHHCCCHHHEEEECCCCCCCCCHHHHHHCCCCCCHHEEECCCCCCHHHHHHCCCC VILDVRSKNDEKTYKRLSQIAPTVYGPKNSKDYQPYQIPWRDQQRQVAKALGRVKEGEEA EEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH IKKTEKAIKDAQDPLYRGLKAALVVQRPSGYGVFAESTRQWDLIRELGFTLEPRVTELFD HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCHHHHHHHHCCCCCCCCHHHHHC GRHAGKDIPSGKLNLIDTDVIVVTVKRGIRKAANHNDPLIASLKASKEGRIIYGSDEFNL CCCCCCCCCCCCEEEEECCEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCEE ALIAGSVLSIPEAIKFLSDKLREIAKKLRNK EEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA